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Commits on Aug 1, 2022

• Learn positional motifs branch merged

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  63a96e5

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Commits on Jul 7, 2022

• Added GC control and shifting profiles options

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  64466fc

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• Added GC control and shifting profiles options

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Commits on Jun 10, 2022

• Tested, with strand invariant behavior

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  eb637e8

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Commits on Jun 7, 2022

• Added utilities for learning and querying motifs from profiles

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Commits on Jun 3, 2022

• Amended code for reconstructing figures from manuscript

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Commits on Jun 2, 2022

• Added data and code for reconstructing figures from manuscript

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  4563154

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Commits on May 31, 2022

• Added Ohler motifs to README

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  a44205b

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• Added Ohler motifs

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Commits on May 20, 2022

• Added quickstart jump link

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  b102b6d

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• Linked to walkthrough notebook.

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  b93b062

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• Linked to walkthrough notebook.

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  fc153d6

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• Linked to walkthrough notebook.

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  9b22ee5

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• Linked to walkthrough notebook.

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  d84c32d

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Commits on May 12, 2022

• Added additional commands for de novo motif discovery and comparison.

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Commits on May 5, 2022

• Added supplementary script for getting TSS from csRNA-seq reads.

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  6c5f2a4

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Commits on May 3, 2022

• Updated notebook to include minimum count threshold, fix issues with profile clustering.

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Commits on Jan 27, 2022

• Updated notebook

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  aeafb74

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• Updated notebook

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  c31d720

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• switch to python-slugify

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  6c15138

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• Notebook update

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  f348e22

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• Notebook update

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  91e51c1

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• added notebook

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  a46b2dd

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Commits on Oct 8, 2021

• resticted CPU only core usage

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  587484c

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Commits on Sep 30, 2021

• Added motif files to data folder, and indicated them in the README

  npdeloss

  committed
  7a6f4ee

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• Added motif files to data folder, and indicated them in the README

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  committed
  b47cdcf

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• Added motif files to data folder

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  4f135c3

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Commits on Sep 29, 2021

• Updated README

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  e4e7fa2

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• Updated README

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  2b2a557

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• Updated README

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  49e3f74

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• Updated README

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  17e7ae4

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• Updated README

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  53e1d89

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• Updated README

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  704e560

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• Updated README

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  c1c8503

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• Updated README

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