DESCRIPTION

Package: scisorseqr
Type: Package
Title: Processes long reads for differential isoform analysis
Version: 0.1.9
Author: Anoushka Joglekar
Maintainer: Anoushka Joglekar <anj2026@med.cornell.edu>
Description: For any comparative (e.g. case-control) studies of alternative splicing,
    scisorseqr is the one stop shop for analyzing single-cell long read data. The linux
    based package includes functions for barcode deconvolution from fastqs,
    integration with long read alignment tools like STARlong and minimap2,
    mapping and filtering of high confidence full-length spliced reads, and some
    handy tools to conduct and visualize differential splicing analysis.
License: Weill Cornell Medicine
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Depends: R (>= 3.5.0)
Suggests:
    data.table,
    parallel,
    data.tree,
    yaml,
    clusterProfiler,
    org.Mm.eg.db,
    DropletUtils,
    plyr,
    utils,
    methods,
    spelling,
    knitr,
    rmarkdown,
    ggplot2,
    cowplot
Imports:
    dplyr,
    tidyr,
    magrittr,
    tibble,
    ggplot2,
    cowplot
Language: en-US
VignetteBuilder: knitr