Restrict plotly version to be < 6.0.0.

Author: lauri-codes

pyproject.toml

@@ -55,6 +55,7 @@ dependencies = [
     'unidecode==1.3.2',
     'wrapt>=1.12.1',
     'xarray>=0.20.2',
+    'plotly<6.0.0',              # version 6.0.0 not fully compatible with our GUI
 ]
 
 [project.urls]
@@ -73,7 +74,7 @@ infrastructure = [
     'asgiref~=3.5',
     'bagit==1.8.1',
     'basicauth==0.4.1',
-    'beautifulsoup4>=4.0',
+    'beautifulsoup4>=4.0,<=4.12.3',
     'celery>=5.0',
     'dockerspawner==13.0.0',
     'elasticsearch>=7.0,<8',

requirements-dev.txt

@@ -1,8 +1,9 @@
 # This file was autogenerated by uv via the following command:
 #    uv pip compile --universal -p 3.10 --annotation-style=line --extra=dev --extra=infrastructure --extra=parsing --output-file=requirements-dev.txt requirements.txt pyproject.toml
+aiofiles==24.1.0          # via python-keycloak, -r requirements.txt
 aiosmtpd==1.4.6           # via nomad-lab (pyproject.toml)
 alabaster==1.0.0          # via sphinx, -r requirements.txt
-alembic==1.14.0           # via jupyterhub, -r requirements.txt
+alembic==1.14.1           # via jupyterhub, -r requirements.txt
 amqp==5.3.1               # via kombu, -r requirements.txt
 aniso8601==10.0.0         # via -r requirements.txt, nomad-lab (pyproject.toml)
 annotated-types==0.7.0    # via pydantic, -r requirements.txt
@@ -13,17 +14,17 @@ asgiref==3.8.1            # via -r requirements.txt, nomad-lab (pyproject.toml)
 asttokens==2.4.1          # via devtools
 async-generator==1.10     # via jupyterhub, -r requirements.txt
 async-property==0.2.2     # via python-keycloak, -r requirements.txt
-atpublic==5.0             # via aiosmtpd
-attrs==24.3.0             # via aiosmtpd, jsonschema, -r requirements.txt
-babel==2.16.0             # via mkdocs-git-revision-date-localized-plugin, mkdocs-material, sphinx, -r requirements.txt
+atpublic==5.1             # via aiosmtpd
+attrs==25.1.0             # via aiosmtpd, jsonschema, -r requirements.txt
+babel==2.17.0             # via mkdocs-git-revision-date-localized-plugin, mkdocs-material, sphinx, -r requirements.txt
 bagit==1.8.1              # via -r requirements.txt, nomad-lab (pyproject.toml)
 basicauth==0.4.1          # via -r requirements.txt, nomad-lab (pyproject.toml)
 beautifulsoup4==4.12.3    # via -r requirements.txt, nomad-lab (pyproject.toml)
 billiard==4.2.1           # via celery, -r requirements.txt
 bitarray==3.0.0           # via -r requirements.txt, nomad-lab (pyproject.toml)
-cachetools==5.5.0         # via -r requirements.txt, nomad-lab (pyproject.toml)
+cachetools==5.5.1         # via -r requirements.txt, nomad-lab (pyproject.toml)
 celery==5.4.0             # via -r requirements.txt, nomad-lab (pyproject.toml)
-certifi==2024.12.14       # via elasticsearch, httpcore, httpx, netcdf4, requests, -r requirements.txt
+certifi==2025.1.31        # via elasticsearch, httpcore, httpx, netcdf4, requests, -r requirements.txt
 certipy==0.2.1            # via jupyterhub, -r requirements.txt
 cffi==1.17.1 ; platform_python_implementation != 'PyPy'  # via cryptography, -r requirements.txt
 cftime==1.6.4.post1       # via netcdf4, -r requirements.txt
@@ -35,8 +36,8 @@ click-repl==0.3.0         # via celery, -r requirements.txt
 colorama==0.4.6           # via click, mkdocs, mkdocs-material, pytest, sphinx, tqdm, uvicorn, -r requirements.txt
 commonmark==0.9.1         # via recommonmark, -r requirements.txt
 contourpy==1.3.1          # via matplotlib, -r requirements.txt
-coverage==7.6.10          # via pytest-cov
-cryptography==44.0.0      # via certipy, jwcrypto, pyjwt, rfc3161ng, -r requirements.txt
+coverage==7.6.12          # via pytest-cov
+cryptography==44.0.1      # via certipy, jwcrypto, pyjwt, rfc3161ng, -r requirements.txt
 cycler==0.12.1            # via matplotlib, -r requirements.txt
 decorator==5.1.1          # via validators, -r requirements.txt
 deprecation==2.1.0        # via python-keycloak, -r requirements.txt
@@ -54,10 +55,10 @@ essential-generators==1.0  # via nomad-lab (pyproject.toml)
 et-xmlfile==2.0.0         # via openpyxl, -r requirements.txt
 exceptiongroup==1.2.2 ; python_full_version < '3.11'  # via anyio, pytest, -r requirements.txt
 execnet==2.1.1            # via pytest-xdist
-executing==2.1.0          # via devtools
+executing==2.2.0          # via devtools
 fastapi==0.115.8          # via h5grove, -r requirements.txt, nomad-lab (pyproject.toml)
 filelock==3.3.1           # via -r requirements.txt, nomad-lab (pyproject.toml)
-fonttools==4.55.3         # via matplotlib, -r requirements.txt
+fonttools==4.56.0         # via matplotlib, -r requirements.txt
 fqdn==1.5.1               # via jsonschema, -r requirements.txt
 ghp-import==2.1.0         # via mkdocs
 gitdb==4.0.12             # via gitpython, -r requirements.txt
@@ -93,24 +94,24 @@ kiwisolver==1.4.8         # via matplotlib, -r requirements.txt
 kombu==5.4.2              # via celery, -r requirements.txt
 lark==1.2.2               # via optimade, -r requirements.txt
 latexcodec==3.0.0         # via pybtex, -r requirements.txt
-lxml==5.3.0               # via lxml-html-clean, -r requirements.txt, nomad-lab (pyproject.toml)
+lxml==5.3.1               # via lxml-html-clean, -r requirements.txt, nomad-lab (pyproject.toml)
 lxml-html-clean==0.4.1    # via -r requirements.txt, nomad-lab (pyproject.toml)
 m2r==0.2.1                # via -r requirements.txt, nomad-lab (pyproject.toml)
-mako==1.3.8               # via alembic, -r requirements.txt
+mako==1.3.9               # via alembic, -r requirements.txt
 markdown==3.7             # via mkdocs, mkdocs-click, mkdocs-material, pymdown-extensions
 markupsafe==3.0.2         # via jinja2, mako, mkdocs, -r requirements.txt, nomad-lab (pyproject.toml)
 matid==2.1.4              # via -r requirements.txt, nomad-lab (pyproject.toml)
 matplotlib==3.10.0        # via ase, pymatgen, -r requirements.txt
 mda-xdrlib==0.2.0         # via pyedr, -r requirements.txt
 mergedeep==1.3.4          # via mkdocs, mkdocs-get-deps
-mistune==3.1.0            # via m2r, -r requirements.txt
+mistune==3.1.1            # via m2r, -r requirements.txt
 mkdocs==1.6.1             # via mkdocs-git-revision-date-localized-plugin, mkdocs-macros-plugin, mkdocs-material, mkdocs-redirects, nomad-lab (pyproject.toml)
 mkdocs-click==0.8.1       # via nomad-lab (pyproject.toml)
 mkdocs-get-deps==0.2.0    # via mkdocs
 mkdocs-git-revision-date-localized-plugin==1.3.0  # via nomad-lab (pyproject.toml)
 mkdocs-glightbox==0.4.0   # via nomad-lab (pyproject.toml)
 mkdocs-macros-plugin==1.3.7  # via nomad-lab (pyproject.toml)
-mkdocs-material==9.5.49   # via nomad-lab (pyproject.toml)
+mkdocs-material==9.6.4    # via nomad-lab (pyproject.toml)
 mkdocs-material-extensions==1.3.1  # via mkdocs-material, nomad-lab (pyproject.toml)
 mkdocs-redirects==1.2.2   # via nomad-lab (pyproject.toml)
 mongoengine==0.29.1       # via -r requirements.txt, nomad-lab (pyproject.toml)
@@ -129,8 +130,8 @@ numpy==1.26.4             # via ase, cftime, contourpy, h5grove, h5py, matid, ma
 oauthenticator==15.1.0    # via -r requirements.txt, nomad-lab (pyproject.toml)
 oauthlib==3.2.2           # via jupyterhub, -r requirements.txt
 openpyxl==3.1.5           # via -r requirements.txt, nomad-lab (pyproject.toml)
-optimade==1.1.10          # via -r requirements.txt, nomad-lab (pyproject.toml)
-orjson==3.10.14           # via h5grove, -r requirements.txt, nomad-lab (pyproject.toml)
+optimade==1.1.11          # via -r requirements.txt, nomad-lab (pyproject.toml)
+orjson==3.10.15           # via h5grove, -r requirements.txt, nomad-lab (pyproject.toml)
 packaging==24.2           # via deprecation, gunicorn, jupyterhub, matplotlib, mkdocs, mkdocs-macros-plugin, mongomock, pint, plotly, pytest, sphinx, xarray, -r requirements.txt
 paginate==0.5.7           # via mkdocs-material
 palettable==3.3.3         # via pymatgen, -r requirements.txt
@@ -139,14 +140,14 @@ pandas==2.2.3             # via panedr, pymatgen, xarray, -r requirements.txt, n
 panedr==0.8.0             # via -r requirements.txt, nomad-lab (pyproject.toml)
 parmed==4.3.0             # via -r requirements.txt, nomad-lab (pyproject.toml)
 pathspec==0.12.1          # via mkdocs, mkdocs-macros-plugin
-pillow==10.0.1            # via matplotlib, rdkit, -r requirements.txt
+pillow==10.0.1            # via matplotlib, rdkit, -c (workspace), -r requirements.txt
 pint==0.17                # via -r requirements.txt, nomad-lab (pyproject.toml)
 platformdirs==4.3.6       # via mkdocs-get-deps
-plotly==5.24.1            # via pymatgen, -r requirements.txt
+plotly==5.24.1            # via pymatgen, -r requirements.txt, nomad-lab (pyproject.toml)
 pluggy==1.5.0             # via pytest
 prometheus-client==0.21.1  # via jupyterhub, -r requirements.txt
-prompt-toolkit==3.0.48    # via click-repl, -r requirements.txt
-psutil==6.1.1 ; sys_platform == 'win32'  # via jupyterhub, -r requirements.txt
+prompt-toolkit==3.0.50    # via click-repl, -r requirements.txt
+psutil==7.0.0 ; sys_platform == 'win32'  # via jupyterhub, -r requirements.txt
 py-spy==0.4.0             # via -r requirements.txt, nomad-lab (pyproject.toml)
 pyasn1==0.6.1             # via pyasn1-modules, rfc3161ng, -r requirements.txt
 pyasn1-modules==0.4.1     # via rfc3161ng, -r requirements.txt
@@ -157,10 +158,10 @@ pydantic-core==2.27.2     # via pydantic, -r requirements.txt
 pydantic-settings==2.7.1  # via h5grove, optimade, -r requirements.txt
 pyedr==0.8.0              # via panedr, -r requirements.txt
 pygments==2.19.1          # via devtools, mkdocs-material, sphinx, -r requirements.txt
-pyinstrument==5.0.0       # via -r requirements.txt, nomad-lab (pyproject.toml)
+pyinstrument==5.0.1       # via -r requirements.txt, nomad-lab (pyproject.toml)
 pyjwt==2.6.0              # via -r requirements.txt, nomad-lab (pyproject.toml)
 pymatgen==2024.5.1        # via -r requirements.txt, nomad-lab (pyproject.toml)
-pymdown-extensions==10.14  # via mkdocs-material
+pymdown-extensions==10.14.3  # via mkdocs-material
 pymongo==4.6.3            # via mongoengine, optimade, -r requirements.txt, nomad-lab (pyproject.toml)
 pyparsing==3.2.1          # via matplotlib, rdflib, -r requirements.txt
 pyrsistent==0.20.0        # via jsonschema, -r requirements.txt
@@ -174,12 +175,12 @@ python-dateutil==2.9.0.post0  # via arrow, celery, elasticsearch-dsl, ghp-import
 python-dotenv==1.0.1      # via pydantic-settings, uvicorn, -r requirements.txt
 python-gitlab==2.10.1     # via nomad-lab (pyproject.toml)
 python-json-logger==2.0.2  # via jupyter-telemetry, -r requirements.txt, nomad-lab (pyproject.toml)
-python-keycloak==5.1.1    # via -r requirements.txt, nomad-lab (pyproject.toml)
+python-keycloak==5.3.1    # via -r requirements.txt, nomad-lab (pyproject.toml)
 python-logstash==0.4.6    # via -r requirements.txt, nomad-lab (pyproject.toml)
 python-magic==0.4.24      # via -r requirements.txt, nomad-lab (pyproject.toml)
 python-magic-bin==0.4.14 ; sys_platform == 'win32'  # via -r requirements.txt, nomad-lab (pyproject.toml)
 python-multipart==0.0.20  # via -r requirements.txt, nomad-lab (pyproject.toml)
-pytz==2024.2              # via mkdocs-git-revision-date-localized-plugin, mongomock, pandas, -r requirements.txt, nomad-lab (pyproject.toml)
+pytz==2025.1              # via mkdocs-git-revision-date-localized-plugin, mongomock, pandas, -r requirements.txt, nomad-lab (pyproject.toml)
 pywin32==308 ; sys_platform == 'win32'  # via docker, -r requirements.txt
 pyyaml==6.0.2             # via mkdocs, mkdocs-get-deps, mkdocs-macros-plugin, pybtex, pymdown-extensions, pyyaml-env-tag, uvicorn, -r requirements.txt, nomad-lab (pyproject.toml)
 pyyaml-env-tag==0.1       # via mkdocs
@@ -195,7 +196,7 @@ rfc3987==1.3.8            # via jsonschema, -r requirements.txt
 rope==0.21.0              # via nomad-lab (pyproject.toml)
 ruamel-yaml==0.18.10      # via jupyter-telemetry, monty, oauthenticator, pymatgen, -r requirements.txt, nomad-lab (pyproject.toml)
 ruamel-yaml-clib==0.2.12 ; python_full_version < '3.13' and platform_python_implementation == 'CPython'  # via ruamel-yaml, -r requirements.txt
-ruff==0.9.1               # via nomad-lab (pyproject.toml)
+ruff==0.9.6               # via nomad-lab (pyproject.toml)
 runstats==2.0.0           # via -r requirements.txt, nomad-lab (pyproject.toml)
 scikit-learn==1.6.1       # via matid, -r requirements.txt, nomad-lab (pyproject.toml)
 scipy==1.15.1             # via ase, pymatgen, scikit-learn, -r requirements.txt, nomad-lab (pyproject.toml)
@@ -214,9 +215,9 @@ sphinxcontrib-htmlhelp==2.1.0  # via sphinx, -r requirements.txt
 sphinxcontrib-jsmath==1.0.1  # via sphinx, -r requirements.txt
 sphinxcontrib-qthelp==2.0.0  # via sphinx, -r requirements.txt
 sphinxcontrib-serializinghtml==2.0.0  # via sphinx, -r requirements.txt
-sqlalchemy==2.0.37        # via alembic, jupyterhub, -r requirements.txt
+sqlalchemy==2.0.38        # via alembic, jupyterhub, -r requirements.txt
 starlette==0.45.3         # via fastapi, -r requirements.txt
-structlog==24.4.0         # via -r requirements.txt, nomad-lab (pyproject.toml)
+structlog==25.1.0         # via -r requirements.txt, nomad-lab (pyproject.toml)
 super-collections==0.5.3  # via mkdocs-macros-plugin
 sympy==1.13.3             # via pymatgen, -r requirements.txt
 tabulate==0.8.9           # via pymatgen, -r requirements.txt, nomad-lab (pyproject.toml)
@@ -230,14 +231,14 @@ tornado==6.4.2            # via jupyterhub, -r requirements.txt
 tqdm==4.67.1              # via pyedr, pymatgen, -r requirements.txt
 traitlets==5.14.3         # via jupyter-telemetry, jupyterhub, -r requirements.txt
 types-python-dateutil==2.9.0.20241206  # via arrow, -r requirements.txt
-typing-extensions==4.12.2  # via alembic, anyio, asgiref, fastapi, h5grove, jwcrypto, mistune, mypy, pydantic, pydantic-core, sqlalchemy, uvicorn, -r requirements.txt, nomad-lab (pyproject.toml)
+typing-extensions==4.12.2  # via alembic, anyio, asgiref, fastapi, h5grove, jwcrypto, mistune, mypy, pydantic, pydantic-core, sqlalchemy, structlog, uvicorn, -r requirements.txt, nomad-lab (pyproject.toml)
 typish==1.9.3             # via nptyping, -r requirements.txt
-tzdata==2024.2            # via celery, kombu, pandas, -r requirements.txt
+tzdata==2025.1            # via celery, kombu, pandas, -r requirements.txt
 uncertainties==3.2.2      # via pymatgen, -r requirements.txt
 unidecode==1.3.2          # via -r requirements.txt, nomad-lab (pyproject.toml)
 uri-template==1.3.0       # via jsonschema, -r requirements.txt
 urllib3==1.26.20          # via docker, elasticsearch, requests, -r requirements.txt
-uv==0.5.18                # via nomad-lab (pyproject.toml)
+uv==0.5.31                # via nomad-lab (pyproject.toml)
 uvicorn==0.34.0           # via h5grove, -r requirements.txt, nomad-lab (pyproject.toml)
 uvloop==0.21.0 ; platform_python_implementation != 'PyPy' and sys_platform != 'cygwin' and sys_platform != 'win32'  # via uvicorn, -r requirements.txt
 validators==0.18.2        # via -r requirements.txt, nomad-lab (pyproject.toml)
@@ -247,8 +248,8 @@ watchfiles==1.0.4         # via uvicorn, -r requirements.txt
 wcwidth==0.2.13           # via prompt-toolkit, -r requirements.txt
 webcolors==24.11.1        # via jsonschema, -r requirements.txt
 webencodings==0.5.1       # via html5lib, -r requirements.txt
-websockets==14.1          # via uvicorn, -r requirements.txt
-wrapt==1.17.1             # via -r requirements.txt, nomad-lab (pyproject.toml)
-xarray==2025.1.1          # via -r requirements.txt, nomad-lab (pyproject.toml)
+websockets==14.2          # via uvicorn, -r requirements.txt
+wrapt==1.17.2             # via -r requirements.txt, nomad-lab (pyproject.toml)
+xarray==2025.1.2          # via -r requirements.txt, nomad-lab (pyproject.toml)
 zipp==3.21.0              # via importlib-metadata, -r requirements.txt
 zipstream-new==1.1.5      # via -r requirements.txt, nomad-lab (pyproject.toml)