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Commits on Sep 17, 2024

• add genome to view flags, fixing bug when merging for genome different than default

  nloyfer

  committedSep 17, 2024
  e7bf6c6

Commits on Sep 16, 2024

• removed unused methods

  nloyfer

  committedSep 16, 2024
  351be5c

• explicitly make subprocess calls with /bin/bash, because in Debian sh now points to dash

  nloyfer

  committedSep 16, 2024
  aa1824d

Commits on Sep 15, 2024

• np.infty -> np.inf

  nloyfer

  committedSep 15, 2024
  b1da9c3

Commits on Sep 8, 2024

• changed zcat to gunzip

  nloyfer

  committedSep 8, 2024
  4a9e909

• fixed help message for --min_cov

  nloyfer

  committedSep 8, 2024
  cf786b9

• return directory after validation

  nloyfer

  committedSep 8, 2024
  79909dd

• fixed samtools version validation

  nloyfer

  committedSep 8, 2024
  48c52b1

Commits on Jul 22, 2024

• fixed sort tmp dir error

  nloyfer

  committedJul 22, 2024
  601e313

Commits on Jul 15, 2024

• fixed bug: sort output pat

  nloyfer

  committedJul 15, 2024
  91ada2c

• add beta flag to mask_pat

  nloyfer

  committedJul 15, 2024
  100e498

• fixed strip bug

  nloyfer

  committedJul 15, 2024
  08aaf77

Commits on Jun 23, 2024

• remove comment

  nloyfer

  committedJun 23, 2024
  019348f

• fixed compilation bug for some versions of gcc

  nloyfer

  committedJun 23, 2024
  aeb8f1b

Commits on May 28, 2024

• Removed TODOs

  nloyfer

  authoredMay 28, 2024
  2ea6735

• Fixed links to point to master

  nloyfer

  authoredMay 28, 2024
  9360562

• Expanding the tutorial (#74)

  

  nloyfer

  and

  rsegel

  authoredMay 28, 2024
  d0c7e9b

Commits on May 23, 2024

• new citation

  nloyfer

  committedMay 23, 2024
  b2e953f

• support lbeta

  nloyfer

  committedMay 23, 2024
  1709918

• remove deprecated np.float

  nloyfer

  committedMay 23, 2024
  630f61f

• add pat long format

  nloyfer

  committedMay 23, 2024
  d573f26

• fix but from the last cram commit

  nloyfer

  committedMay 23, 2024
  9b246f9

• use the default ref genome to read cram

  

  GatKrieger

  authored and

  nloyfer

  committedMay 23, 2024
  5e7cd0b

Commits on Mar 18, 2024

• pylint

  nloyfer

  committedMar 18, 2024
  25036b3

• pylint

  nloyfer

  committedMar 18, 2024
  5d37eb6

• pylint

  nloyfer

  committedMar 18, 2024
  ca8e72e

• fixed broken cwrap

  nloyfer

  committedMar 18, 2024
  4335d4d

• pylint

  nloyfer

  committedMar 18, 2024
  0b2ed14

• removed repro feature

  nloyfer

  committedMar 18, 2024
  1206c74

• pylint

  nloyfer

  committedMar 18, 2024
  3da9f47

• flip hist direction to fix x and y labels correctness. xlim and ylim

  nloyfer

  committedMar 18, 2024
  5cec213

Commits on Mar 17, 2024

• pylint

  nloyfer

  committedMar 17, 2024
  1d7c172

• pylint

  nloyfer

  committedMar 17, 2024
  08d40f2

• support CRAM files

  nloyfer

  committedMar 17, 2024
  dc0f1a3

• comply with pylint

  nloyfer

  committedMar 17, 2024
  371dab9

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