tag:github.com,2008:https://github.com/nipy/nipype/releases 2025-03-19T23:20:36Z tag:github.com,2008:Repository/791477/1.10.0 2025-03-19T23:38:43Z <h2>Release Notes</h2> <p>New feature release in the 1.10.x series.</p> <p>This release adds GPUs to multiprocess resource management. In general, no changes to existing code should be required if the GPU-enabled interface has a <code>use_gpu</code> input. The <code>n_gpu_procs</code> can be used to set the number of GPU processes that may be run in parallel, which will override the default of GPUs identified by <code>nvidia-smi</code>, or 1 if no GPUs are detected.</p> <h2>What's Changed</h2> <ul> <li>FIX: Reimplement <code>gpu_count()</code> (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2895016968" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3718" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3718/hovercard" href="https://github.com/nipy/nipype/pull/3718">#3718</a>)</li> <li>FIX: Avoid 0D array in <code>algorithms.misc.merge_rois</code> (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2845739151" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3713" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3713/hovercard" href="https://github.com/nipy/nipype/pull/3713">#3713</a>)</li> <li>FIX: Allow nipype.sphinx.ext.apidoc Config to work with Sphinx 8.2.1+ (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2881431819" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3716" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3716/hovercard" href="https://github.com/nipy/nipype/pull/3716">#3716</a>)</li> <li>FIX: Resolve crashes when running workflows with updatehash=True (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2797526425" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3709" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3709/hovercard" href="https://github.com/nipy/nipype/pull/3709">#3709</a>)</li> <li>ENH: Support for gpu queue (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2202463321" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3642" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3642/hovercard" href="https://github.com/nipy/nipype/pull/3642">#3642</a>)</li> <li>ENH: Update to .wci.yml (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2796931155" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3708" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3708/hovercard" href="https://github.com/nipy/nipype/pull/3708">#3708</a>)</li> <li>ENH: Add Workflow Community Initiative (WCI) descriptor (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1928111033" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3608" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3608/hovercard" href="https://github.com/nipy/nipype/pull/3608">#3608</a>)</li> </ul> <h2>New Contributors</h2> <ul> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/u11kumar/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/u11kumar">@u11kumar</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1928111033" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3608" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3608/hovercard" href="https://github.com/nipy/nipype/pull/3608">#3608</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/rafaelfsilva/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/rafaelfsilva">@rafaelfsilva</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2796931155" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3708" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3708/hovercard" href="https://github.com/nipy/nipype/pull/3708">#3708</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/man-shu/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/man-shu">@man-shu</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2845739151" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3713" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3713/hovercard" href="https://github.com/nipy/nipype/pull/3713">#3713</a></li> </ul> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/nipy/nipype/compare/1.9.2...1.10.0"><tt>1.9.2...1.10.0</tt></a></p> effigies tag:github.com,2008:Repository/791477/1.9.2 2025-03-19T23:17:22Z <h2>Release Notes</h2> <p>Bug fix release in the 1.9.x series.</p> <h2>What's Changed</h2> <ul> <li>FIX: Missed np.savetxt bstring (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2745299678" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3704" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3704/hovercard" href="https://github.com/nipy/nipype/pull/3704">#3704</a>)</li> <li>MAINT: Bump astral-sh/setup-uv from 3 to 4 (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2689041403" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3702" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3702/hovercard" href="https://github.com/nipy/nipype/pull/3702">#3702</a>)</li> <li>MAINT: Bump codecov/codecov-action from 4 to 5 (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2689041816" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3703" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3703/hovercard" href="https://github.com/nipy/nipype/pull/3703">#3703</a>)</li> </ul> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/nipy/nipype/compare/1.9.1...1.9.2"><tt>1.9.1...1.9.2</tt></a></p> effigies tag:github.com,2008:Repository/791477/1.9.1 2025-03-19T23:16:36Z <h2>Release Notes</h2> <p>Bug fix release in the 1.9.x series.</p> <p>This release adds support for Numpy 2 and Python 3.13.</p> <h2>What's Changed</h2> <ul> <li>FIX: Restore generate_gantt_chart functionality (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="782385514" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3290" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3290/hovercard" href="https://github.com/nipy/nipype/pull/3290">#3290</a>)</li> <li>FIX: Address numpy and traits deprecations (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2668606632" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3699" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3699/hovercard" href="https://github.com/nipy/nipype/pull/3699">#3699</a>)</li> <li>FIX: <code>ts_Z_corr</code> → <code>ts_wb_Z</code> (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2650194312" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3697" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3697/hovercard" href="https://github.com/nipy/nipype/pull/3697">#3697</a>)</li> <li>ENH: Remove unused and recently unsupported antsRegistration flag (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2645337331" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3695" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3695/hovercard" href="https://github.com/nipy/nipype/pull/3695">#3695</a>)</li> <li>MAINT: Bump codecov/codecov-action from 4 to 5 (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2667071683" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3698" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3698/hovercard" href="https://github.com/nipy/nipype/pull/3698">#3698</a>)</li> </ul> <h2>New Contributors</h2> <ul> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/shnizzedy/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/shnizzedy">@shnizzedy</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2650194312" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3697" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3697/hovercard" href="https://github.com/nipy/nipype/pull/3697">#3697</a></li> </ul> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/nipy/nipype/compare/1.9.0...1.9.1"><tt>1.9.0...1.9.1</tt></a></p> effigies tag:github.com,2008:Repository/791477/1.9.0 2025-03-19T23:15:32Z <h2>Release Notes</h2> <p>New feature release in the 1.9.x series.</p> <h2>What's Changed</h2> <ul> <li>FIX: Remove exists=True from fsl.MotionOutliers output that might not exist (<a href="https://github.com/n">https://github.com/n</a></li> <li>FIX: Improve evaluate_connect_function errors across Python versions (<a href="https://github.com/nipy/nip">https://github.com/nipy/nip</a></li> <li>FIX: Changed inheritance of TensorMetricsInputSpec (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2442000355" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3663" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3663/hovercard" href="https://github.com/nipy/nipype/pull/3663">#3663</a>)</li> <li>FIX: Add cropped files to dcm2niix output (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1933394848" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3609" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3609/hovercard" href="https://github.com/nipy/nipype/pull/3609">#3609</a>)</li> <li>FIX: Deduplicate dcm2niix output (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1933407669" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3610" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3610/hovercard" href="https://github.com/nipy/nipype/pull/3610">#3610</a>)</li> <li>FIX: Parse commas in CSV fields (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2184690379" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3637" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3637/hovercard" href="https://github.com/nipy/nipype/pull/3637">#3637</a>)</li> <li>FIX: MRTrix3 change inputs position for MRTransform (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1934745128" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3611" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3611/hovercard" href="https://github.com/nipy/nipype/pull/3611">#3611</a>)</li> <li>FIX: Use out_prefix instead of "w" in spm.Normalize12 (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1880322068" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3600" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3600/hovercard" href="https://github.com/nipy/nipype/pull/3600">#3600</a>)</li> <li>FIX: Fix typo in spm.Normalize12 process (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1877559985" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3599" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3599/hovercard" href="https://github.com/nipy/nipype/pull/3599">#3599</a>)</li> <li>FIX: DWIPreproc issue (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1829940849" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3596" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3596/hovercard" href="https://github.com/nipy/nipype/pull/3596">#3596</a>)</li> <li>FIX: DWIPreproc issue (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1829940849" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3596" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3596/hovercard" href="https://github.com/nipy/nipype/pull/3596">#3596</a>)</li> <li>FIX: Fix bugs with <code>fsl_out=True</code> and <code>lta_out=True</code> (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="4104425" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/358" data-hovercard-type="issue" data-hovercard-url="/nipy/nipype/issues/358/hovercard" href="https://github.com/nipy/nipype/issues/358">#358</a></li> <li>FIX: Test failures (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1789806655" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3587" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3587/hovercard" href="https://github.com/nipy/nipype/pull/3587">#3587</a>)</li> <li>FIX: update merge_imgs input type of dcm2niix Node (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1613264832" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3548" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3548/hovercard" href="https://github.com/nipy/nipype/pull/3548">#3548</a>)</li> <li>FIX: update sample_random_points and random_seed type of ProbTrackXBaseInputSpec (<a href="https://github" rel="nofollow">https://github</a>.</li> <li>FIX: update self.inputs.optimization in outputs for GTMPVC (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="263631" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3" data-hovercard-type="issue" data-hovercard-url="/nipy/nipype/issues/3/hovercard" href="https://github.com/nipy/nipype/issues/3">#3</a></li> <li>ENH: Support HDF5 (mat 7.3) SPM.mat files (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2313468213" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3650" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3650/hovercard" href="https://github.com/nipy/nipype/pull/3650">#3650</a>)</li> <li>ENH: FILMGLS gifti output support in surface mode (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2328886450" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3652" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3652/hovercard" href="https://github.com/nipy/nipype/pull/3652">#3652</a>)</li> <li>ENH: Added available inputs for MRTrix3's 5ttgen (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2420940791" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3658" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3658/hovercard" href="https://github.com/nipy/nipype/pull/3658">#3658</a>)</li> <li>ENH: Add functions to mrtrix3 interface (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1959321840" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3613" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3613/hovercard" href="https://github.com/nipy/nipype/pull/3613">#3613</a>)</li> <li>ENH: Update PETsurfer interface (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1887192451" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3602" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3602/hovercard" href="https://github.com/nipy/nipype/pull/3602">#3602</a>)</li> <li>ENH: Add 'hsvs' option to 5ttgen + mrtransform fix (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2143850424" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3630" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3630/hovercard" href="https://github.com/nipy/nipype/pull/3630">#3630</a>)</li> <li>ENH: add STC PVC to PETPVC interface (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2166833055" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3634" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3634/hovercard" href="https://github.com/nipy/nipype/pull/3634">#3634</a>)</li> <li>ENH: Add GenericLabel to ANTS ApplyTransforms. (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2026501245" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3617" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3617/hovercard" href="https://github.com/nipy/nipype/pull/3617">#3617</a>)</li> <li>ENH: Issue 3553 add mvecs to dcm2niix (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1638408904" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3554" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3554/hovercard" href="https://github.com/nipy/nipype/pull/3554">#3554</a>)</li> <li>ENH: add contrast outputs for EstimatedModel (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1748184493" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3577" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3577/hovercard" href="https://github.com/nipy/nipype/pull/3577">#3577</a>)</li> <li>ENH: Issue 3345: Adding FreeSurfer longitudinal interfaces (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="263631" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3" data-hovercard-type="issue" data-hovercard-url="/nipy/nipype/issues/3/hovercard" href="https://github.com/nipy/nipype/issues/3">#3</a></li> <li>ENH: Enable SPM voxel-based FDR (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1652455189" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3558" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3558/hovercard" href="https://github.com/nipy/nipype/pull/3558">#3558</a>)</li> <li>REF: Replace deprecated pkgutil.find_loader with importlib.util.find_spec (<a href="https://github.com/nip">https://github.com/nip</a></li> <li>REF: io.open() → open() (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1729410484" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3575" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3575/hovercard" href="https://github.com/nipy/nipype/pull/3575">#3575</a>)</li> <li>REF: Stop using deprecated import internally (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1657909863" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3561" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3561/hovercard" href="https://github.com/nipy/nipype/pull/3561">#3561</a>)</li> <li>DOC: Patch doc/conf.py to work with latest ReadTheDocs (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2571116856" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3691" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3691/hovercard" href="https://github.com/nipy/nipype/pull/3691">#3691</a>)</li> <li>DOC/FIX: Fix wrong name, should be al_ea (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2129230814" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3629" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3629/hovercard" href="https://github.com/nipy/nipype/pull/3629">#3629</a>)</li> <li>DOC: Fix typos newly found by codespell (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1917039227" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3606" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3606/hovercard" href="https://github.com/nipy/nipype/pull/3606">#3606</a>)</li> <li>STY: Apply ruff/pycodestyle rules (E) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2568861464" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3689" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3689/hovercard" href="https://github.com/nipy/nipype/pull/3689">#3689</a>)</li> <li>STY: Apply ruff rules (RUF) again (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2568808552" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3688" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3688/hovercard" href="https://github.com/nipy/nipype/pull/3688">#3688</a>)</li> <li>STY: Apply ruff/Pyflakes rules (F) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2541062013" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3681" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3681/hovercard" href="https://github.com/nipy/nipype/pull/3681">#3681</a>)</li> <li>STY: Apply ruff/Perflint rules (PERF) again (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2568801077" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3687" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3687/hovercard" href="https://github.com/nipy/nipype/pull/3687">#3687</a>)</li> <li>STY: Apply ruff/flake8-comprehensions preview rules (C4) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="4302041" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/368" data-hovercard-type="issue" data-hovercard-url="/nipy/nipype/issues/368/hovercard" href="https://github.com/nipy/nipype/issues/368">#368</a></li> <li>STY: Apply ruff/flake8-simplify rules (SIM) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2541025431" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3676" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3676/hovercard" href="https://github.com/nipy/nipype/pull/3676">#3676</a>)</li> <li>STY: Apply ruff/flake8-bugbear rules (B) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2540889255" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3671" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3671/hovercard" href="https://github.com/nipy/nipype/pull/3671">#3671</a>)</li> <li>STY: Apply ruff/flake8-comprehensions rules (C4) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2541042538" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3680" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3680/hovercard" href="https://github.com/nipy/nipype/pull/3680">#3680</a>)</li> <li>STY: Apply ruff/Perflint rules (PERF) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2540975177" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3674" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3674/hovercard" href="https://github.com/nipy/nipype/pull/3674">#3674</a>)</li> <li>STY: Apply ruff/flake8-implicit-str-concat rules (ISC) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2541036944" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3679" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3679/hovercard" href="https://github.com/nipy/nipype/pull/3679">#3679</a>)</li> <li>STY: Apply ruff/flake8-pie rules (PIE) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2541032310" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3678" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3678/hovercard" href="https://github.com/nipy/nipype/pull/3678">#3678</a>)</li> <li>STY: Apply ruff/flake8-raise rules (RSE) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2541026396" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3677" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3677/hovercard" href="https://github.com/nipy/nipype/pull/3677">#3677</a>)</li> <li>STY: Apply ruff/flynt rules (FLY) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2540983357" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3675" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3675/hovercard" href="https://github.com/nipy/nipype/pull/3675">#3675</a>)</li> <li>STY: Apply ruff rules (RUF) (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2540906798" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3673" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3673/hovercard" href="https://github.com/nipy/nipype/pull/3673">#3673</a>)</li> <li>STY: Codespell (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2540896075" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3672" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3672/hovercard" href="https://github.com/nipy/nipype/pull/3672">#3672</a>)</li> <li>STY: Apply ruff/refurb rules (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2279590231" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3648" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3648/hovercard" href="https://github.com/nipy/nipype/pull/3648">#3648</a>)</li> <li>STY: Apply ruff/pyupgrade rules (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2279565271" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3647" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3647/hovercard" href="https://github.com/nipy/nipype/pull/3647">#3647</a>)</li> <li>STY: Adjusted variable names for clarity and codespell false positives (<a href="https://github.com/nipy/n">https://github.com/nipy/n</a></li> <li>STY: Remove duplicated trait in EddyOutputSpec (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1703023979" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3568" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3568/hovercard" href="https://github.com/nipy/nipype/pull/3568">#3568</a>)</li> <li>STY: Black edits (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="263625" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/1" data-hovercard-type="issue" data-hovercard-url="/nipy/nipype/issues/1/hovercard" href="https://github.com/nipy/nipype/issues/1">#1</a>)</li> <li>MNT: Replace deprecated imghdr (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2425772602" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3659" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3659/hovercard" href="https://github.com/nipy/nipype/pull/3659">#3659</a>)</li> <li>MNT: Use regular ".now" instead of ".utcnow" with UTC zone (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="263631" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3" data-hovercard-type="issue" data-hovercard-url="/nipy/nipype/issues/3/hovercard" href="https://github.com/nipy/nipype/issues/3">#3</a></li> <li>MNT: Apply assorted repo-review rules (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2542438143" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3682" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3682/hovercard" href="https://github.com/nipy/nipype/pull/3682">#3682</a>)</li> <li>MNT: Drop traits upper bound (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2564297499" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3685" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3685/hovercard" href="https://github.com/nipy/nipype/pull/3685">#3685</a>)</li> <li>MNT: Configure dependabot to update GH workflows (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1866650939" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3597" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3597/hovercard" href="https://github.com/nipy/nipype/pull/3597">#3597</a>)</li> <li>MNT: Replace deprecated locale.getdefaultlocale (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1791646326" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3590" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3590/hovercard" href="https://github.com/nipy/nipype/pull/3590">#3590</a>)</li> <li>MNT: Require Python 3.8+, auto-upgrade syntax (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1789924775" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3588" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3588/hovercard" href="https://github.com/nipy/nipype/pull/3588">#3588</a>)</li> <li>CI: Test Python 3.12 support (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2198491984" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3638" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3638/hovercard" href="https://github.com/nipy/nipype/pull/3638">#3638</a>)</li> <li>CI: Test on Python 3.11 (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1790079386" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3589" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3589/hovercard" href="https://github.com/nipy/nipype/pull/3589">#3589</a>)</li> <li>CI/FIX: configure codespell, add workflow, typos fixed (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1617685019" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3549" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3549/hovercard" href="https://github.com/nipy/nipype/pull/3549">#3549</a>)</li> </ul> <h2>New Contributors</h2> <ul> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/asmacdo/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/asmacdo">@asmacdo</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1657909863" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3561" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3561/hovercard" href="https://github.com/nipy/nipype/pull/3561">#3561</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/yibeichan/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/yibeichan">@yibeichan</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1703023979" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3568" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3568/hovercard" href="https://github.com/nipy/nipype/pull/3568">#3568</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/mmbannert/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/mmbannert">@mmbannert</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1652455189" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3558" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3558/hovercard" href="https://github.com/nipy/nipype/pull/3558">#3558</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/l-espana/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/l-espana">@l-espana</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1469620734" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3529" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3529/hovercard" href="https://github.com/nipy/nipype/pull/3529">#3529</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/jadecci/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/jadecci">@jadecci</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1774885924" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3583" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3583/hovercard" href="https://github.com/nipy/nipype/pull/3583">#3583</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/manuegrx/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/manuegrx">@manuegrx</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1748184493" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3577" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3577/hovercard" href="https://github.com/nipy/nipype/pull/3577">#3577</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/pvelasco/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/pvelasco">@pvelasco</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1638408904" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3554" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3554/hovercard" href="https://github.com/nipy/nipype/pull/3554">#3554</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/stebo85/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/stebo85">@stebo85</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2129230814" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3629" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3629/hovercard" href="https://github.com/nipy/nipype/pull/3629">#3629</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/zachlindsey/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/zachlindsey">@zachlindsey</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2184690379" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3637" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3637/hovercard" href="https://github.com/nipy/nipype/pull/3637">#3637</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/teanijarv/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/teanijarv">@teanijarv</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2143850424" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3630" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3630/hovercard" href="https://github.com/nipy/nipype/pull/3630">#3630</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/lbutry/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/lbutry">@lbutry</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1959321840" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3613" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3613/hovercard" href="https://github.com/nipy/nipype/pull/3613">#3613</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/penguinpee/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/penguinpee">@penguinpee</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2425772602" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3659" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3659/hovercard" href="https://github.com/nipy/nipype/pull/3659">#3659</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/bogpetre/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/bogpetre">@bogpetre</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2328886450" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3652" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3652/hovercard" href="https://github.com/nipy/nipype/pull/3652">#3652</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/scott-huberty/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/scott-huberty">@scott-huberty</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2356222296" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3655" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3655/hovercard" href="https://github.com/nipy/nipype/pull/3655">#3655</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/adamnarai/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/adamnarai">@adamnarai</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="2313468213" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3650" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3650/hovercard" href="https://github.com/nipy/nipype/pull/3650">#3650</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/beausievers/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/beausievers">@beausievers</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="147233973" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/1428" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/1428/hovercard" href="https://github.com/nipy/nipype/pull/1428">#1428</a></li> </ul> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/nipy/nipype/compare/1.8.6...1.9.0"><tt>1.8.6...1.9.0</tt></a></p> effigies tag:github.com,2008:Repository/791477/1.8.6 2025-03-19T23:14:41Z <h2>Release Notes</h2> <p>Bug-fix release in the 1.8.x series.</p> <h2>What's Changed</h2> <ul> <li>FIX: Update dcmstack interface for Py3 / newer pydicom (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1563529724" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3541" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3541/hovercard" href="https://github.com/nipy/nipype/pull/3541">#3541</a>)</li> <li>FIX: NiBabel 5, and NetworkX 3 and DIPY 1.6 compatibility (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1560864298" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3538" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3538/hovercard" href="https://github.com/nipy/nipype/pull/3538">#3538</a>)</li> <li>FIX: Check for non-mandatory output in DWIBiasCorrect (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1388858894" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3523" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3523/hovercard" href="https://github.com/nipy/nipype/pull/3523">#3523</a>)</li> <li>FIX: Removed leftover debug print statement in FEAT class (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1386741004" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3521" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3521/hovercard" href="https://github.com/nipy/nipype/pull/3521">#3521</a>)</li> <li>DOC: Fix a few more typos (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1381194338" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3516" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3516/hovercard" href="https://github.com/nipy/nipype/pull/3516">#3516</a>)</li> <li>DOC: Fix typos found by codespell (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1380435944" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3512" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3512/hovercard" href="https://github.com/nipy/nipype/pull/3512">#3512</a>)</li> <li>CI: Drop nipy tests until a fixed nipy is released (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1656050972" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3559" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3559/hovercard" href="https://github.com/nipy/nipype/pull/3559">#3559</a>)</li> <li>CI: Disable nipy tests generally, re-add with max numpy (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1511928049" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3532" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3532/hovercard" href="https://github.com/nipy/nipype/pull/3532">#3532</a>)</li> <li>CI: GitHub Workflows security hardening (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1385947420" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3519" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3519/hovercard" href="https://github.com/nipy/nipype/pull/3519">#3519</a>)</li> <li>CI: Allow tutorial test cancellation (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1381077023" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3514" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3514/hovercard" href="https://github.com/nipy/nipype/pull/3514">#3514</a>)</li> </ul> <h2>New Contributors</h2> <ul> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/somso2e/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/somso2e">@somso2e</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1386741004" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3521" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3521/hovercard" href="https://github.com/nipy/nipype/pull/3521">#3521</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/MatthieuJoulot/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/MatthieuJoulot">@MatthieuJoulot</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1388858894" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3523" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3523/hovercard" href="https://github.com/nipy/nipype/pull/3523">#3523</a></li> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/sashashura/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/sashashura">@sashashura</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1385947420" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3519" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3519/hovercard" href="https://github.com/nipy/nipype/pull/3519">#3519</a></li> </ul> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/nipy/nipype/compare/1.8.5...1.8.6"><tt>1.8.5...1.8.6</tt></a></p> effigies tag:github.com,2008:Repository/791477/1.8.5 2025-03-19T23:13:56Z <h2>Release notes</h2> <p>Bug-fix release in the 1.8.x series.</p> <h2>What's Changed</h2> <ul> <li>FIX: Use interpolation/method in numpy.percentile as available (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1373580380" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3506" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3506/hovercard" href="https://github.com/nipy/nipype/pull/3506">#3506</a>)</li> <li>FIX: Deployed Matlab applications must not call addpath() (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1379732219" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3509" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3509/hovercard" href="https://github.com/nipy/nipype/pull/3509">#3509</a>)</li> <li>FIX: Provide more runtime information when node execution fails (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1373227948" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3505" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3505/hovercard" href="https://github.com/nipy/nipype/pull/3505">#3505</a>)</li> <li>FIX: Fixed bug for work dirs longer than 255 characters, fixes <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="233039434" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/2061" data-hovercard-type="issue" data-hovercard-url="/nipy/nipype/issues/2061/hovercard" href="https://github.com/nipy/nipype/issues/2061">#2061</a> (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1313739301" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3495" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3495/hovercard" href="https://github.com/nipy/nipype/pull/3495">#3495</a>)</li> <li>FIX: Update ApplyVDM to handle 4D inputs (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1342838986" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3500" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3500/hovercard" href="https://github.com/nipy/nipype/pull/3500">#3500</a>)</li> <li>ENH: Explicitly specify write_text encoding format (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1378618322" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3508" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3508/hovercard" href="https://github.com/nipy/nipype/pull/3508">#3508</a>)</li> <li>DOC: Fix typos found by copdespell (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1379773809" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3510" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3510/hovercard" href="https://github.com/nipy/nipype/pull/3510">#3510</a>)</li> <li>MAINT: Add github action to trigger tutorials for release branches (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1360530959" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3504" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3504/hovercard" href="https://github.com/nipy/nipype/pull/3504">#3504</a>)</li> <li>CI: Set up build-test-deploy workflow on GHA (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1380903829" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3513" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3513/hovercard" href="https://github.com/nipy/nipype/pull/3513">#3513</a>)</li> </ul> <h2>New Contributors</h2> <ul> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/prioux/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/prioux">@prioux</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1313739301" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3495" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3495/hovercard" href="https://github.com/nipy/nipype/pull/3495">#3495</a></li> </ul> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/nipy/nipype/compare/1.8.4...1.8.5"><tt>1.8.4...1.8.5</tt></a></p> effigies tag:github.com,2008:Repository/791477/1.8.4 2022-09-01T22:11:24Z <h2>Release Notes</h2> <p>Bug-fix release in the 1.8.x series.</p> <p>This release sets a maximum traits version to avoid new, breaking changes.</p> <h2>What's Changed</h2> <ul> <li>MNT: Pin traits &lt; 6.4 (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1346449935" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3501" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3501/hovercard" href="https://github.com/nipy/nipype/pull/3501">#3501</a>) <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/effigies/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/effigies">@effigies</a></li> <li>ENH: Add inputs to mrtrix3.DWIPreprocInputSpec and remove mandatory annotation for pe_dir (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1233131702" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3470" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3470/hovercard" href="https://github.com/nipy/nipype/pull/3470">#3470</a>) @GalBenZvi</li> </ul> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/nipy/nipype/compare/1.8.3...1.8.4"><tt>1.8.3...1.8.4</tt></a></p> release-drafter[bot] tag:github.com,2008:Repository/791477/1.8.3 2022-07-14T15:35:17Z <h2>Release Notes</h2> <p>Bug-fix release in the 1.8.x series.</p> <p>This release includes compatibility fixes for nibabel 4.x and resolves a denial-of-service<br> bug when the etelemetry server is down that resulted in excessive (blocking) network hits that<br> would cause any tools using nipype interfaces to take a very long time.</p> <h2>What's Changed</h2> <ul> <li>FIX: Argument order to <code>numpy.save()</code> (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1272487988" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3485" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3485/hovercard" href="https://github.com/nipy/nipype/pull/3485">#3485</a>)</li> <li>FIX: Add tolerance parameter to ComputeDVARS (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1301384526" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3489" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3489/hovercard" href="https://github.com/nipy/nipype/pull/3489">#3489</a>)</li> <li>FIX: Delay access of nibabel.trackvis until actually needed (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1301365450" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3488" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3488/hovercard" href="https://github.com/nipy/nipype/pull/3488">#3488</a>)</li> <li>FIX: Avoid excessive etelemetry pings (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1269934684" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3484" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3484/hovercard" href="https://github.com/nipy/nipype/pull/3484">#3484</a>)</li> <li>ENH: Added outputs' generation to DWIBiascorrect interface (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1235535941" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3476" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3476/hovercard" href="https://github.com/nipy/nipype/pull/3476">#3476</a>)</li> </ul> <h2>New Contributors</h2> <ul> <li><a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/LostBenjamin/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/LostBenjamin">@LostBenjamin</a> made their first contribution in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1272487988" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3485" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3485/hovercard" href="https://github.com/nipy/nipype/pull/3485">#3485</a></li> </ul> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/nipy/nipype/compare/1.8.2...1.8.3"><tt>1.8.2...1.8.3</tt></a></p> effigies tag:github.com,2008:Repository/791477/1.8.2 2022-06-06T17:38:16Z <p>Bug-fix release in the 1.8.x series.</p> <p>This release restores compatibility with networkx 2.8.3, which errors when<br> graph nodes might conflict with pydot parsing.</p> <p>Full changelog: <a href="https://github.com/nipy/nipype/milestone/1.8.2?closed=1">https://github.com/nipy/nipype/milestone/1.8.2?closed=1</a></p> <ul> <li>ENH: Enable compression with Gunzip interface (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1235012924" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3472" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3472/hovercard" href="https://github.com/nipy/nipype/pull/3472">#3472</a>)</li> <li>CI: Schedule weekly tests with cron (<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1262097712" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3480" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3480/hovercard" href="https://github.com/nipy/nipype/pull/3480">#3480</a>)</li> </ul> effigies tag:github.com,2008:Repository/791477/1.8.1 2022-05-16T20:45:54Z <h1>1.8.1 (May 16, 2022)</h1> <p>Bug-fix release in the 1.8.x series.</p> <p>The previous release vendored <code>distutils.version.LooseVersion</code>, and the vendored objects did not preserve compatiblity with the <code>distutils</code> objects. This release switches to the <a href="https://pypi.org/project/looseversion/" rel="nofollow">looseversion</a> package that ensures compatiblity.</p> <h2>What's Changed</h2> <ul> <li>RF: Use looseversion package instead of vendoring by <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/effigies/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/effigies">@effigies</a> in <a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="1237342045" data-permission-text="Title is private" data-url="https://github.com/nipy/nipype/issues/3477" data-hovercard-type="pull_request" data-hovercard-url="/nipy/nipype/pull/3477/hovercard" href="https://github.com/nipy/nipype/pull/3477">#3477</a></li> </ul> <p><strong>Full Changelog</strong>: <a class="commit-link" href="https://github.com/nipy/nipype/compare/1.8.0...1.8.1"><tt>1.8.0...1.8.1</tt></a></p> effigies