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ANTs visualization module #966

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Merged
merged 5 commits into from
Nov 18, 2014
Merged

ANTs visualization module #966

merged 5 commits into from
Nov 18, 2014

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armaneshaghi
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There is still a lot that needs to be done, and I'm still working on this so please bear with me.

@armaneshaghi
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@satra I have this idea, which is borrowed from a talk given by @fperez in Washington university:
I would like to add a functionality, so that the user can show images in IPython notebook while the analysis is still ongoing perhaps with some interactive widgets, however, I'm not really sure whether this is possible in Nipype workflows (e.g., after workflow.run(plugin = 'SGE')). This could be potentially important because:
1- assures quality check from the output of the desired nodes
2- sometimes the analysis takes days, this could increase the efficiency of quality check as the user will still be able to interact with the notebook.

How does it sound? @fperez could you please point me to some examples? as far as I remember, you were talking about an analysis in department of Physics somewhere, and that they were able to show the results of their analysis inside the notebook as far as the analysis had gone at that point of time.

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satra commented Oct 19, 2014

@armaneshaghi - there is work going on to do this. here is an early version:

http://50.17.19.74:51000/

in fact people are hacking on this at brainhackEDT in boston today.

@@ -1,5 +1,3 @@
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
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These two lines mess up my vim

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Coverage Status

Coverage increased (+0.01%) when pulling 5c5057f on armaneshaghi:antsVisualization into 2e578e0 on nipy:master.

@armaneshaghi
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To do:

  • antsSurf for construction of surface

@armaneshaghi
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@satra you can merge this, maybe i can get to antsSurf in future when I get the time.

chrisgorgo added a commit that referenced this pull request Nov 18, 2014
@chrisgorgo chrisgorgo merged commit f7558b9 into nipy:master Nov 18, 2014
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4 participants