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Fix nipy#3653 and nipy#3654 in the CAT12 Interface #3683

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Fix nipy#3653 and nipy#3654 in the CAT12 Interface #3683

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Summary

Fixes nipy#3653 and nipy#3654.

List of changes proposed in this PR (pull-request)

  • Added input trait for the option of no surface measures (noROI) in the CAT12 Segment function.
  • Added missing input traits (that were added to the Matlab GUI but not updated in Nipype's CAT12 Interface) for the templates used for surface measures (e.g. thalamus, thalamic_nuclei).
  • Added option to process compressed nifti files (.nii.gz) like the latest GUI version allows.
  • Corrected if statement for saving ROI and ROIs (surface measure) files.

@JailanOweda JailanOweda changed the title Fix #3653 and #3654 in the CAT12 Interface Fix nipy#3653 and nipy#3654 in the CAT12 Interface Sep 25, 2024
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nipype.interfaces.cat12.preprocess.CAT12Segment does not accept compressed .nii.gz files
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