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[ENH] Add interface to antsAffineInitializer #1980

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Merged
merged 2 commits into from
Apr 29, 2017

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oesteban
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Adds a very simple interface to antsAffineInitializer, which is used
in the antsBrainExtraction.sh script to initialize the registration to
template.

Adds a very simple interface to `antsAffineInitializer`, which is used
in the `antsBrainExtraction.sh` script to initialize the registration to
template.
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Codecov Report

Merging #1980 into master will increase coverage by 0.01%.
The diff coverage is 90.9%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #1980      +/-   ##
==========================================
+ Coverage    72.6%   72.61%   +0.01%     
==========================================
  Files        1070     1071       +1     
  Lines       54456    54487      +31     
  Branches     7868     7872       +4     
==========================================
+ Hits        39537    39565      +28     
- Misses      13686    13688       +2     
- Partials     1233     1234       +1
Flag Coverage Δ
#smoketests 72.61% <90.9%> (+0.01%) ⬆️
#unittests 70.16% <90.9%> (+0.01%) ⬆️
Impacted Files Coverage Δ
nipype/interfaces/ants/__init__.py 100% <100%> (ø) ⬆️
...terfaces/ants/tests/test_auto_AffineInitializer.py 85.71% <85.71%> (ø)
nipype/interfaces/ants/utils.py 85.71% <94.44%> (+1.93%) ⬆️

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Δ = absolute <relative> (impact), ø = not affected, ? = missing data
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@codecov-io
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codecov-io commented Apr 28, 2017

Codecov Report

Merging #1980 into master will increase coverage by 0.01%.
The diff coverage is 90.9%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #1980      +/-   ##
==========================================
+ Coverage    72.6%   72.61%   +0.01%     
==========================================
  Files        1070     1071       +1     
  Lines       54456    54487      +31     
  Branches     7868     7872       +4     
==========================================
+ Hits        39537    39565      +28     
- Misses      13686    13688       +2     
- Partials     1233     1234       +1
Flag Coverage Δ
#smoketests 72.61% <90.9%> (+0.01%) ⬆️
#unittests 70.16% <90.9%> (+0.01%) ⬆️
Impacted Files Coverage Δ
nipype/interfaces/ants/__init__.py 100% <100%> (ø) ⬆️
...terfaces/ants/tests/test_auto_AffineInitializer.py 85.71% <85.71%> (ø)
nipype/interfaces/ants/utils.py 85.71% <94.44%> (+1.93%) ⬆️

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update a17af6b...703c9a2. Read the comment docs.

output_spec = AffineInitializerOutputSpec

def _list_outputs(self):
return {'out_file': os.path.abspath(self.inputs.out_file)}
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i'll merge this, but does this not happen automatically from the specified out_file in inputs?

@satra satra merged commit aa9e859 into nipy:master Apr 29, 2017
@oesteban oesteban deleted the enh/AntsAffineInitializer branch May 1, 2017 01:46
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3 participants