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ENH: Added new attributes to DWIConvert input spec #1483

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Merged
merged 2 commits into from
May 30, 2016
Merged

ENH: Added new attributes to DWIConvert input spec #1483

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6d4535e
ENH: Added allowLossyConversion to DWIConvert input spec
aghayoor May 24, 2016
e818b64
ENH: Added transposeInputBVectors to DWIConvert input spec
aghayoor May 24, 2016
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2 changes: 2 additions & 0 deletions nipype/interfaces/semtools/diffusion/diffusion.py
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Original file line number Diff line number Diff line change
Expand Up @@ -244,6 +244,8 @@ class DWIConvertInputSpec(CommandLineInputSpec):
outputDirectory = traits.Either(traits.Bool, Directory(), hash_files=False, desc="Directory holding the output NRRD file", argstr="--outputDirectory %s")
gradientVectorFile = traits.Either(traits.Bool, File(), hash_files=False, desc="Text file giving gradient vectors", argstr="--gradientVectorFile %s")
smallGradientThreshold = traits.Float(desc="If a gradient magnitude is greater than 0 and less than smallGradientThreshold, then DWIConvert will display an error message and quit, unless the useBMatrixGradientDirections option is set.", argstr="--smallGradientThreshold %f")
allowLossyConversion = traits.Bool(desc="The only supported output type is \'short\'. Conversion from images of a different type may cause data loss due to rounding or truncation. Use with caution!", argstr="--allowLossyConversion ")
transposeInputBVectors = traits.Bool(desc="FSL input BVectors are expected to be encoded in the input file as one vector per line. If it is not the case, use this option to transpose the file as it is read.", argstr="--transposeInputBVectors ")


class DWIConvertOutputSpec(TraitedSpec):
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4 changes: 4 additions & 0 deletions nipype/interfaces/semtools/diffusion/tests/test_auto_DWIConvert.py
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Expand Up @@ -51,6 +51,10 @@ def test_DWIConvert_inputs():
),
writeProtocolGradientsFile=dict(argstr='--writeProtocolGradientsFile ',
),
allowLossyConversion=dict(argstr='--allowLossyConversion ',
),
transposeInputBVectors=dict(argstr='--transposeInputBVectors ',
),
)
inputs = DWIConvert.input_spec()

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