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ENH: Add new command line for BRAINSABC tool #1322

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Merged
merged 1 commit into from
Jan 17, 2016

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hjmjohnson
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A new featue set has been added to improve
the quality of segmentations from the BRAINSABC
tool.

purePlugsThreshold = If this threshold value is greater than zero, only pure samples are used to compute the distributions in EM classification, and only pure samples are used for KNN training. The default value is set to 0, that means not using pure plugs. However, a value of 0.2 is suggested if you want to activate using pure plugs option.

numberOfSubSamplesInEachPlugArea -- How many samples in each plug area to create.

@hjmjohnson
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Ran 14705 tests in 549.389s

OK (SKIP=57)
removed spaces
built docs
ran test
generated spec tests

A new featue set has been added to improve
the quality of segmentations from the BRAINSABC
tool.

purePlugsThreshold = If this threshold value is greater than zero, only pure samples are used to compute the distributions in EM classification, and only pure samples are used for KNN training. The default value is set to 0, that means not using pure plugs. However, a value of 0.2 is suggested if you want to activate using pure plugs option.

numberOfSubSamplesInEachPlugArea -- How many samples in each plug area to create.
@hjmjohnson hjmjohnson force-pushed the AddPurePlugsProcessingToBRAINSABC branch from d8231b9 to 052cf86 Compare January 15, 2016 22:38
@hjmjohnson
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@satra A small change for a new feature we added to the BRAINSABC program. Could this please be merged soon?

satra added a commit that referenced this pull request Jan 17, 2016
ENH: Add new command line for BRAINSABC tool
@satra satra merged commit a5ad273 into master Jan 17, 2016
@hjmjohnson hjmjohnson deleted the AddPurePlugsProcessingToBRAINSABC branch February 17, 2016 01:16
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2 participants