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def create_skullstripped_recon_flow (name = "skullstripped_recon_all" ):
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"""Performs recon-all on voulmes that are already skull stripped.
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FreeSurfer failes to perform skullstrippig on some volumes (especially
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- MP2RAGE). This can be avoided by doing skullstripping before runnig recon-all
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- (using for example SPECTRE algorithm)
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+ MP2RAGE). This can be avoided by doing skullstripping before running
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+ recon-all (using for example SPECTRE algorithm).
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Example
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-------
@@ -107,7 +107,7 @@ def create_reconall_workflow(name="ReconAll", plugin_args=None):
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inputspec.cw256 : Conform inputs to 256 FOV (optional)
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inputspec.num_threads: Number of threads on nodes that utilize OpenMP (default=1)
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plugin_args : Dictionary of plugin args to set to nodes that utilize OpenMP (optional)
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- Outpus ::
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+ Outputs ::
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postdatasink_outputspec.subject_id : name of the datasinked output folder in the subjects directory
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