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Merge branch 'master' into fix/CheckInputsLoggingHashDiff
2 parents 6172119 + 1353628 commit 5888dc9

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.travis.yml

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- pip install python-coveralls
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- pip install nose-cov
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- pip install -r requirements.txt # finish remaining requirements
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- pip install https://github.com/RDFLib/rdflib/archive/master.zip
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- pip install https://github.com/trungdong/prov/archive/rdf.zip
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- python setup.py install
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script:
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- python -W once:FSL:UserWarning:nipype `which nosetests` --with-doctest --with-cov --cover-package nipype --cov-config .coveragerc --logging-level=INFO

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============
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* FIX: Minor bugfix logging hash differences (https://github.com/nipy/nipype/pull/1298)
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* FIX: Use released Prov python library (https://github.com/nipy/nipype/pull/1279)
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* ENH: Support for Python 3 (https://github.com/nipy/nipype/pull/1221)
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* FIX: VTK version check missing when using tvtk (https://github.com/nipy/nipype/pull/1219)
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* ENH: Added an OAR scheduler plugin (https://github.com/nipy/nipype/pull/1259)
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* ENH: New ANTs interface: antsBrainExtraction (https://github.com/nipy/nipype/pull/1231)

circle.yml

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- if [[ ! -d ~/fsl ]]; then wget "http://fsl.fmrib.ox.ac.uk/fsldownloads/fsl-5.0.9-centos6_64.tar.gz"; tar zxvf fsl-5.0.9-centos6_64.tar.gz; mv fsl ~/fsl; fi
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- if [[ ! -d ~/examples/data ]]; then wget "http://tcpdiag.dl.sourceforge.net/project/nipy/nipype/nipype-0.2/nipype-tutorial.tar.bz2"; tar jxvf nipype-tutorial.tar.bz2; mkdir ~/examples; mv nipype-tutorial/* ~/examples/; fi
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# we download this manually because CircleCI does not cache apt
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- if [[ ! -d ~/examples/feeds ]]; then wget "http://fsl.fmrib.ox.ac.uk/fsldownloads/fsl-5.0.9-feeds.tar.gz"; tar zxvf fsl-5.0.8-feeds.tar.gz; mv feeds ~/examples/; fi
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- if [[ ! -d ~/examples/feeds ]]; then wget "http://fsl.fmrib.ox.ac.uk/fsldownloads/fsl-5.0.9-feeds.tar.gz"; tar zxvf fsl-5.0.9-feeds.tar.gz; mv feeds ~/examples/; fi
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- if [[ ! -d ~/examples/fsl_course_data ]]; then wget -c "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt1.tar.gz" ; wget -c "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt2.tar.gz"; wget -c "http://fsl.fmrib.ox.ac.uk/fslcourse/tbss.tar.gz"; mkdir ~/examples/fsl_course_data; tar zxvf fdt1.tar.gz -C ~/examples/fsl_course_data; tar zxvf fdt2.tar.gz -C ~/examples/fsl_course_data; tar zxvf tbss.tar.gz -C ~/examples/fsl_course_data; fi
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- bash ~/nipype/tools/install_spm_mcr.sh
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- mkdir -p ~/.nipype && echo "[logging]" > ~/.nipype/nipype.cfg && echo "workflow_level = DEBUG" >> ~/.nipype/nipype.cfg && echo "interface_level = DEBUG" >> ~/.nipype/nipype.cfg && echo "filemanip_level = DEBUG" >> ~/.nipype/nipype.cfg

nipype/COMMIT_INFO.txt

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# This is an ini file that may contain information about the code state
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[commit hash]
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# The line below may contain a valid hash if it has been substituted during 'git archive'
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archive_subst_hash=$Format:%h$
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archive_subst_hash=$Format:%%h$
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# This line may be modified by the install process
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install_hash=

nipype/algorithms/tests/test_auto_ErrorMap.py

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nipype/algorithms/tests/test_auto_Overlap.py

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