diff --git a/.codespellrc b/.codespellrc index 1192e63c5b..6b83f1227e 100644 --- a/.codespellrc +++ b/.codespellrc @@ -10,4 +10,4 @@ skip = .git,*.pdf,*.svg,external # ALS, FWE - neuroimaging specific abbrevs # Comision - foreign word used # expad - AFNI flag -ignore-words-list = te,inport,objekt,jist,nd,hel,inout,fith,whos,fot,ue,shs,smal,nam,filetest,suh,noo,reson,als,fwe,crasher,comision,afile,expad +ignore-words-list = te,inport,objekt,jist,nd,hel,inout,fith,whos,fot,ue,shs,smal,nam,filetest,suh,noo,reson,als,fwe,crasher,comision,afile,expad,burnin diff --git a/nipype/interfaces/freesurfer/utils.py b/nipype/interfaces/freesurfer/utils.py index a449bde9d7..fdb652804c 100644 --- a/nipype/interfaces/freesurfer/utils.py +++ b/nipype/interfaces/freesurfer/utils.py @@ -2821,7 +2821,7 @@ def _format_arg(self, name, spec, value): if name in ["in_T1", "in_aseg"]: # These inputs do not take full paths as inputs or even basenames basename = os.path.basename(value) - # whent the -mgz flag is specified, it assumes the mgz extension + # when the -mgz flag is specified, it assumes the mgz extension if self.inputs.mgz: prefix = os.path.splitext(basename)[0] else: diff --git a/nipype/pipeline/plugins/base.py b/nipype/pipeline/plugins/base.py index c4957281d9..fe632f8c59 100644 --- a/nipype/pipeline/plugins/base.py +++ b/nipype/pipeline/plugins/base.py @@ -628,7 +628,7 @@ def _get_args(self, node, keywords): def _submit_graph(self, pyfiles, dependencies, nodes): """ pyfiles: list of files corresponding to a topological sort - dependencies: dictionary of dependencies based on the toplogical sort + dependencies: dictionary of dependencies based on the topological sort """ raise NotImplementedError diff --git a/nipype/utils/docparse.py b/nipype/utils/docparse.py index ce15bfa541..0cbaf1ff07 100644 --- a/nipype/utils/docparse.py +++ b/nipype/utils/docparse.py @@ -131,7 +131,7 @@ def insert_doc(doc, new_items): Parameters ---------- doc : str - The existing docstring we're inserting docmentation into. + The existing docstring we're inserting documentation into. new_items : list List of strings to be inserted in the ``doc``. diff --git a/nipype/utils/matlabtools.py b/nipype/utils/matlabtools.py index fdde853b6e..ea06cd4126 100644 --- a/nipype/utils/matlabtools.py +++ b/nipype/utils/matlabtools.py @@ -56,7 +56,7 @@ def mlab_tempfile(dir=None): # infinite loop for some strange reason, we only try 100 times. for n in range(100): f = tempfile.NamedTemporaryFile(suffix=".m", prefix="tmp_matlab_", dir=dir) - # Check the file name for matlab compilance + # Check the file name for matlab compliance fname = os.path.splitext(os.path.basename(f.name))[0] if valid_name.match(fname): break