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default outname and single file doc test
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nipype/interfaces/dcm2nii.py

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -192,7 +192,7 @@ class Dcm2niixInputSpec(CommandLineInputSpec):
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copyfile=False, mandatory=True, xor=['source_dir'])
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source_dir = Directory(exists=True, argstr="%s", position=-1, mandatory=True,
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xor=['source_names'])
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out_filename = traits.Str('%q', argstr="-f %s", usedefault=True)
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out_filename = traits.Str('%t%p', argstr="-f %s", usedefault=True)
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output_dir = Directory(exists=True, argstr='-o %s', genfile=True)
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bids_format = traits.Bool(True, argstr='-b', usedefault=True)
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compress = traits.Enum('i', ['y','i','n'], argstr='-z %s', usedefault=True)
@@ -216,9 +216,10 @@ class Dcm2niix(CommandLine):
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>>> converter = Dcm2niix()
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>>> converter.inputs.source_names = ['functional_1.dcm', 'functional_2.dcm']
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>>> converter.inputs.compress = 'i'
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>>> converter.inputs.single_file = True
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>>> converter.inputs.output_dir = '.'
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>>> converter.cmdline
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'dcm2niix -b y -z i -m n -f %q -o . -s n -v n functional_1.dcm'
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'dcm2niix -b y -z i -m n -f %q -o . -s y -v n functional_1.dcm'
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"""
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input_spec = Dcm2niixInputSpec

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