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ENH,WIP: New transforms module #656

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wants to merge 36 commits into from
Closed

ENH,WIP: New transforms module #656

wants to merge 36 commits into from

Commits on Sep 20, 2019

  1. ENH: Add an utility to calculate obliquity of affines 

    This implementation mimics the implementation of AFNI.
    @oesteban
    oesteban committed Sep 20, 2019
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  2. enh(tests): add not-oblique test, move tests to test_affines.py 

    Addressing one of @matthew-brett's comments.
    @oesteban
    oesteban committed Sep 20, 2019
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Commits on Sep 22, 2019

  1. enh: return radians unless degrees=True

    @oesteban
    oesteban committed Sep 22, 2019
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Commits on Sep 23, 2019

  1. enh: address @matthew-brett's comments

    @oesteban
    oesteban committed Sep 23, 2019
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Commits on Sep 24, 2019

  1. doc: add link to AFNI's documentation about *obliquity* [skip ci]

    @oesteban
    oesteban committed Sep 24, 2019
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Commits on Sep 27, 2019

  1. Initial commit

    @oesteban
    oesteban committed Sep 27, 2019
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  2. add TransformBase

    @oesteban
    oesteban committed Sep 27, 2019
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  3. add new module

    @oesteban
    oesteban committed Sep 27, 2019
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  4. add documentation, core functionality

    @oesteban
    oesteban committed Sep 27, 2019
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  5. add a deformation field transform

    @oesteban
    oesteban committed Sep 27, 2019
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  6. optimize deformation field

    @oesteban
    oesteban committed Sep 27, 2019
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  7. pre-cache transformed indexes

    @oesteban
    oesteban committed Sep 27, 2019
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  8. used cached field

    @oesteban
    oesteban committed Sep 27, 2019
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  9. add caching of deltas in voxel coordinates

    @oesteban
    oesteban committed Sep 27, 2019
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  10. add bspline cython extension

    @oesteban
    oesteban committed Sep 27, 2019
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  11. a smarter ImageSpace

    @oesteban
    oesteban committed Sep 27, 2019
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  12. add comment

    @oesteban
    oesteban committed Sep 27, 2019
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  13. remove cython module

    @oesteban
    oesteban committed Sep 27, 2019
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  14. cleanup

    @oesteban
    oesteban committed Sep 27, 2019
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  15. starting with bspline transform

    @oesteban
    oesteban committed Sep 27, 2019
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  16. finishing b-spline interpolation

    @oesteban
    oesteban committed Sep 27, 2019
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  17. Add base implementation of transforms and change base implementation … 

    …of linear and nonlinear transforms
    @oesteban
    oesteban committed Sep 27, 2019
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  18. export to hdf5

    @oesteban
    oesteban committed Sep 27, 2019
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  19. corrections to adhere the current x5 format draft

    @oesteban
    oesteban committed Sep 27, 2019
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  20. fix coordinates translation in affines, import itk affines

    @oesteban
    oesteban committed Sep 27, 2019
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  21. wip: reads & writes ITK's MatrixOffsetTransformBase transforms, with … 

    …and without FixedParameters
    @oesteban
    oesteban committed Sep 27, 2019
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  22. fix: print warnings to stderr, sty: minimal fixes

    @oesteban
    oesteban committed Sep 27, 2019
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  23. enh(affines): write out AFNI 12-parameters files

    @oesteban
    oesteban committed Sep 27, 2019
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  24. enh(transforms): finish up a x5-to-fsl writer of affines

    @oesteban
    oesteban committed Sep 27, 2019
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  25. enh(transforms): improve generation of x5 structures of reference spaces

    @oesteban
    oesteban committed Sep 27, 2019
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  26. fix(transforms): string formating forgotten when writing ITK transforms

    @oesteban
    oesteban committed Sep 27, 2019
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  27. wip(transforms): writing up some linear transform readers

    @oesteban
    oesteban committed Sep 27, 2019
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  28. enh(transform): HDF5 - set values as attributes; generalize affines t… 

    …o N transforms (through time axis)
    @oesteban
    oesteban committed Sep 27, 2019
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  29. enh: apply some early comments from @effigies.

    @oesteban
    oesteban committed Sep 27, 2019
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  30. fix: add a first battery of tests 

    Added some initial tests to check the writing of transforms to ITK and
FSL formats.
    @oesteban
    oesteban committed Sep 27, 2019
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  31. enh: add tests for affines stored in AFNI format (non-oblique images)

    @oesteban
    oesteban committed Sep 27, 2019
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