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committedOct 19, 2020
TST: Clean up test
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‎nibabel/cifti2/tests/test_new_cifti2.py

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Original file line numberDiff line numberDiff line change
@@ -7,12 +7,11 @@
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scratch.
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"""
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import numpy as np
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import nibabel as nib
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from nibabel import cifti2 as ci
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from nibabel.tmpdirs import InTemporaryDirectory
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import pytest
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from ...testing import (
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clear_and_catch_warnings, error_warnings, suppress_warnings, assert_array_equal)
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@@ -515,17 +514,13 @@ def test_cifti_validation():
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geometry_map = create_geometry_map((0, ))
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label_map = create_label_map((1, ))
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matrix = ci.Cifti2Matrix()
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matrix.append(label_map)
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matrix.append(geometry_map)
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matrix.append(label_map)
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hdr = ci.Cifti2Header(matrix)
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data = np.random.randn(10, 2)
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img = ci.Cifti2Image(data, hdr)
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# attempt to save and validate with an invalid extension
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with pytest.raises(KeyError):
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ci.save(img, 'test.dlabelz.nii')
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# even with a proper extension, flipped index maps will fail
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with pytest.raises(ci.Cifti2HeaderError):
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# flipped index maps will warn
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with InTemporaryDirectory(), pytest.warns(UserWarning):
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ci.save(img, 'test.dlabel.nii')
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label_map = create_label_map((0, ))
@@ -538,16 +533,16 @@ def test_cifti_validation():
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img = ci.Cifti2Image(data, hdr)
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with InTemporaryDirectory():
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# still fail with invalid extension and validation
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with pytest.raises(KeyError):
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ci.save(img, 'test.dlabelz.nii')
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# but removing validation should work (though intent code will be unknown)
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ci.save(img, 'test.dlabelz.nii', validate=False)
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img2 = nib.load('test.dlabelz.nii')
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assert img2.nifti_header.get_intent()[0] == 'ConnUnknown'
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ci.save(img, 'test.validate.nii', validate=False)
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ci.save(img, 'test.dlabel.nii')
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img2 = nib.load('test.dlabel.nii')
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img3 = nib.load('test.validate.nii')
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assert img2.nifti_header.get_intent()[0] == 'ConnDenseLabel'
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assert img3.nifti_header.get_intent()[0] == 'ConnUnknown'
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assert isinstance(img2, ci.Cifti2Image)
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assert isinstance(img3, ci.Cifti2Image)
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assert_array_equal(img2.get_fdata(), data)
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check_label_map(img2.header.matrix.get_index_map(0))
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check_geometry_map(img2.header.matrix.get_index_map(1))
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del img2
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del img2, img3

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