test for BF viwers non RSA matrices

Author: gjpcbecq

nibabel/tests/test_viewers.py

@@ -136,20 +136,19 @@ def test_viewer_nonRAS():
     assert_array_equal(axi, data1[:, 13, :].T)
 
 
-
 @needs_mpl
 def test_viewer_nonRAS_on_mouse():
     """
     test on_mouse selection on non RAS matrices
-    
+
     """
-    # This affine simulates an acquisition on a quadruped subject that is in a prone position. 
-    # This corresponds to an acquisition with: 
+    # This affine simulates an acquisition on a quadruped subject that is in a prone position.
+    # This corresponds to an acquisition with:
     # - LR inverted on scanner x (i)
     # - IS on scanner y (j)
     # - PA on scanner z (k)
-    # This example enables to test also OrthoSlicer3D properties `_flips` and `_order`. 
-    
+    # This example enables to test also OrthoSlicer3D properties `_flips` and `_order`.
+
     (I, J, K) = (10, 20, 40)
     data1 = np.random.rand(I, J, K)
     (i_target, j_target, k_target) = (2, 14, 12)
@@ -159,68 +158,65 @@ def test_viewer_nonRAS_on_mouse():
     j2 = j_target + 3
     k1 = k_target - 4
     k2 = k_target + 4
-    data1[i1: i2 + 1, j1: j2 + 1, k1: k2 + 1] = 0
+    data1[i1 : i2 + 1, j1 : j2 + 1, k1 : k2 + 1] = 0
     data1[i_target, j_target, k_target] = 1
     valp1 = 1.5
     valm1 = 0.5
-    data1[i_target - 1, j_target, k_target] = valp1 # x flipped
-    data1[i_target + 1, j_target, k_target] = valm1 # x flipped
+    data1[i_target - 1, j_target, k_target] = valp1  # x flipped
+    data1[i_target + 1, j_target, k_target] = valm1  # x flipped
     data1[i_target, j_target - 1, k_target] = valm1
     data1[i_target, j_target + 1, k_target] = valp1
     data1[i_target, j_target, k_target - 1] = valm1
     data1[i_target, j_target, k_target + 1] = valp1
-    
-    aff1 = np.array([[-1, 0, 0, 5], 
-                     [0, 0, 1, -10], 
-                     [0, 1, 0, -30], 
-                     [0, 0, 0, 1]])
-    
+
+    aff1 = np.array([[-1, 0, 0, 5], [0, 0, 1, -10], [0, 1, 0, -30], [0, 0, 0, 1]])
+
     o1 = OrthoSlicer3D(data1, aff1)
-    
-    class Event: 
-        def __init__(self): 
-            self.name = "simulated mouse event"
+
+    class Event:
+        def __init__(self):
+            self.name = 'simulated mouse event'
             self.button = 1
-            
+
     event = Event()
     event.xdata = k_target
     event.ydata = j_target
     event.inaxes = o1._ims[0].axes
     o1._on_mouse(event)
-    
+
     event.inaxes = o1._ims[1].axes
-    event.xdata = (I - 1) - i_target # x flipped
+    event.xdata = (I - 1) - i_target  # x flipped
     event.ydata = j_target
     o1._on_mouse(event)
-    
+
     event.inaxes = o1._ims[2].axes
-    event.xdata = (I - 1) - i_target # x flipped
+    event.xdata = (I - 1) - i_target  # x flipped
     event.ydata = k_target
     o1._on_mouse(event)
-    
+
     sag = o1._ims[0].get_array()
     cor = o1._ims[1].get_array()
     axi = o1._ims[2].get_array()
-    
-    assert_array_equal(sag, data1[i_target, :, :]) # 
-    assert_array_equal(cor, data1[::-1, :, k_target].T) # x flipped
-    assert_array_equal(axi, data1[::-1, j_target, :].T) # x flipped
+
+    assert_array_equal(sag, data1[i_target, :, :])  #
+    assert_array_equal(cor, data1[::-1, :, k_target].T)  # x flipped
+    assert_array_equal(axi, data1[::-1, j_target, :].T)  # x flipped
     return None
 
 
 @needs_mpl
 def test_viewer_nonRAS_on_scroll():
     """
     test scrolling on non RAS matrices
-    
+
     """
-    # This affine simulates an acquisition on a quadruped subject that is in a prone position. 
-    # This corresponds to an acquisition with: 
+    # This affine simulates an acquisition on a quadruped subject that is in a prone position.
+    # This corresponds to an acquisition with:
     # - LR inverted on scanner x (i)
     # - IS on scanner y (j)
     # - PA on scanner z (k)
     # This example enables to test also OrthoSlicer3D properties `_flips` and `_order`.
-    
+
     (I, J, K) = (10, 20, 40)
     data1 = np.random.rand(I, J, K)
     (i_target, j_target, k_target) = (2, 14, 12)
@@ -230,40 +226,35 @@ def test_viewer_nonRAS_on_scroll():
     j2 = j_target + 3
     k1 = k_target - 4
     k2 = k_target + 4
-    data1[i1: i2 + 1, j1: j2 + 1, k1: k2 + 1] = 0
+    data1[i1 : i2 + 1, j1 : j2 + 1, k1 : k2 + 1] = 0
     data1[i_target, j_target, k_target] = 1
     valp1 = 1.5
     valm1 = 0.5
-    data1[i_target - 1, j_target, k_target] = valp1 # x flipped
-    data1[i_target + 1, j_target, k_target] = valm1 # x flipped
+    data1[i_target - 1, j_target, k_target] = valp1  # x flipped
+    data1[i_target + 1, j_target, k_target] = valm1  # x flipped
     data1[i_target, j_target - 1, k_target] = valm1
     data1[i_target, j_target + 1, k_target] = valp1
     data1[i_target, j_target, k_target - 1] = valm1
     data1[i_target, j_target, k_target + 1] = valp1
-    
-    aff1 = np.array([[-1, 0, 0, 5], 
-                     [0, 0, 1, -10], 
-                     [0, 1, 0, -30], 
-                     [0, 0, 0, 1]])
-    
+
+    aff1 = np.array([[-1, 0, 0, 5], [0, 0, 1, -10], [0, 1, 0, -30], [0, 0, 0, 1]])
+
     o1 = OrthoSlicer3D(data1, aff1)
-    
-    class Event: 
-        def __init__(self): 
-            self.name = "simulated mouse event"
+
+    class Event:
+        def __init__(self):
+            self.name = 'simulated mouse event'
             self.button = None
             self.key = None
-    
-    i_last = data1.shape[0] - 1
-    
+
     [x_t, y_t, z_t] = list(aff1.dot(np.array([i_target, j_target, k_target, 1]))[:3])
     # print(x_t, y_t, z_t)
     # scanner positions are x_t=3, y_t=2, z_t=16
-    
+
     event = Event()
-    
+
     # Sagittal plane - one scroll up
-    # x coordinate is flipped so index decrease by 1 
+    # x coordinate is flipped so index decrease by 1
     o1.set_position(x_t, y_t, z_t)
     event.inaxes = o1._ims[0].axes
     event.button = 'up'
@@ -272,10 +263,10 @@ def __init__(self):
     cor = o1._ims[1].get_array()
     axi = o1._ims[2].get_array()
     assert_array_equal(sag, data1[i_target - 1, :, :])
-    assert_array_equal(cor, data1[::-1, :, k_target].T) # ::-1 because the array is flipped in x
-    assert_array_equal(axi, data1[::-1, j_target, :].T) # ::-1 because the array is flipped in x
-    
-    # Sagittal plane - one scrolled down 
+    assert_array_equal(cor, data1[::-1, :, k_target].T)  # ::-1 because the array is flipped in x
+    assert_array_equal(axi, data1[::-1, j_target, :].T)  # ::-1 because the array is flipped in x
+
+    # Sagittal plane - one scrolled down
     o1.set_position(x_t, y_t, z_t)
     event.button = 'down'
     o1._on_scroll(event)
@@ -285,9 +276,9 @@ def __init__(self):
     assert_array_equal(sag, data1[i_target + 1, :, :])
     assert_array_equal(cor, data1[::-1, :, k_target].T)
     assert_array_equal(axi, data1[::-1, j_target, :].T)
-    
+
     # Coronal plane - one scroll up
-    # y coordinate is increase by 1 
+    # y coordinate is increase by 1
     o1.set_position(x_t, y_t, z_t)
     event.inaxes = o1._ims[1].axes
     event.button = 'up'
@@ -296,10 +287,12 @@ def __init__(self):
     cor = o1._ims[1].get_array()
     axi = o1._ims[2].get_array()
     assert_array_equal(sag, data1[i_target, :, :])
-    assert_array_equal(cor, data1[::-1, :, k_target + 1].T) # ::-1 because the array is flipped in x
-    assert_array_equal(axi, data1[::-1, j_target, :].T) # ::-1 because the array is flipped in x
-    
-    # Coronal plane - one scrolled down 
+    assert_array_equal(
+        cor, data1[::-1, :, k_target + 1].T
+    )  # ::-1 because the array is flipped in x
+    assert_array_equal(axi, data1[::-1, j_target, :].T)  # ::-1 because the array is flipped in x
+
+    # Coronal plane - one scrolled down
     o1.set_position(x_t, y_t, z_t)
     event.button = 'down'
     o1._on_scroll(event)
@@ -309,9 +302,9 @@ def __init__(self):
     assert_array_equal(sag, data1[i_target, :, :])
     assert_array_equal(cor, data1[::-1, :, k_target - 1].T)
     assert_array_equal(axi, data1[::-1, j_target, :].T)
-    
+
     # Axial plane - one scroll up
-    # y is increase by 1 
+    # y is increase by 1
     o1.set_position(x_t, y_t, z_t)
     event.inaxes = o1._ims[2].axes
     event.button = 'up'
@@ -320,10 +313,12 @@ def __init__(self):
     cor = o1._ims[1].get_array()
     axi = o1._ims[2].get_array()
     assert_array_equal(sag, data1[i_target, :, :])
-    assert_array_equal(cor, data1[::-1, :, k_target].T) # ::-1 because the array is flipped in x
-    assert_array_equal(axi, data1[::-1, j_target + 1, :].T) # ::-1 because the array is flipped in x
-    
-    # Axial plane - one scrolled down 
+    assert_array_equal(cor, data1[::-1, :, k_target].T)  # ::-1 because the array is flipped in x
+    assert_array_equal(
+        axi, data1[::-1, j_target + 1, :].T
+    )  # ::-1 because the array is flipped in x
+
+    # Axial plane - one scrolled down
     o1.set_position(x_t, y_t, z_t)
     event.button = 'down'
     o1._on_scroll(event)
@@ -333,4 +328,4 @@ def __init__(self):
     assert_array_equal(sag, data1[i_target, :, :])
     assert_array_equal(cor, data1[::-1, :, k_target].T)
     assert_array_equal(axi, data1[::-1, j_target - 1, :].T)
-    return None
+    return None