2.6.0 (November 10, 2023)

New feature release in the 2.6.0 series.

This release resolves a number of issues with fieldmaps inducing distortions
during correction. Phase difference and direct fieldmaps are now masked correctly,
preventing the overestimation of distortions outside the brain. Additionally,
we now implement Jacobian weighting during unwarping, which corrects for compression
and expansion effects on signal intensity.

* FIX: Mask fieldmap before fitting spline field (#396)
* FIX: Interpolate to floating point values (#394)
* FIX: Refactoring the ``B0FieldTransform`` implementation (#346)
* FIX: Nipype workflows like to be passed absolute paths (phasediff fieldmap) (#374)
* ENH: Implement Jacobian weighting during unwarp (#391)
* ENH: Output target2fmap_xfm from coeff2epi_wf (#381)
* ENH: Add data loader to sdcflows.data, drop pkg_resources (#379)
* RF: Use scipy.interpolate.BSpline to construct spline basis (#393)
* DOC: Use latest sphinx to fix bad sphinx/furo interaction (#390)
* DOC: Fix missing dependency when merging new data loader (#380)
* MNT: Update emprical values in test to allow transition to new scipy's BSpline (#387)
* MNT: Add pre-commit config (#375)
* MNT: Add a seed to random generator of coefficients (#368)

2.5.2 (November 09, 2023)

Bug-fix release in the 2.5.x series.

This release includes a fix for phasediff/direct fieldmaps that were previously
producing distortions outside the brain due to an incorrect masking of the fieldmap.

* FIX: Mask fieldmap before fitting spline field [backport gh-396] (#398)
* DOC: Fix doc build for 2.5.x branch (#399)
* MAINT: Make call to scipy.stats.mode compatible with scipy 1.11.0 (#371)

1.3.4 (July 07, 2023)

Bug-fix release in 1.3.x series.

* FIX: Limit ``3dQwarp`` to maximum 4 CPUs for stability reasons (#128)
* MAINT: Make call to scipy.stats.mode compatible with scipy 1.11.0 (#371)
* CI: Update docker/machine images for 1.3.x branch (#327)

2.5.1 (June 08, 2023)

Bug-fix release in the 2.5.x series.

* FIX: Use ``lsqr`` solver for spline fit, rerun on extreme values (#366)
* FIX: Ensure metadata is not present in entity query (#367)
* RF/FIX: Prioritize sbref and shortest echo for SyN-SDC (#364)

2.5.0 (June 01, 2023)

New feature release in the 2.5.x series.

This release includes a number of changes to default behaviors.
SyN-SDC will be performed per-BOLD/DWI image, unless specified otherwise with
``B0FieldIdentifier``\s, and may now be specified with T2w images as anatomical
references as well.
Additionally, PEPolar fieldmaps will only be grouped if they share ``IntendedFor``
metadata.

Finally, as a small UX improvement, if magnitude1/magnitude2 images have differing
affines but are in register, we will now copy the header rather than requiring the
user to update the header themselves.

* FIX: Ensure IntendedFor metadata is a subject-relative path (#360)
* ENH: Split SyN fieldmap estimates per-EPI (#312)
* ENH: Allow non-T1w anatomical estimators (#358)
* ENH: Function to calculate reference grids aligned with the coefficients (#355)
* ENH: Check registration of magnitude1/magnitude2 images and update headers (#356)
* RF: Split PEPolar fieldmaps by intent, if available (#342)
* CI: Use supported codecov uploaders (#348)

2.4.3 (April 24, 2023)

Bug-fix release in the 2.4.x series.

This fix resolves an inconsistency of treatment of phase-difference and
scanner-calculated fieldmaps, relative to PEPolar and SyN. Fieldmaps in
orientations other than RAS were impacted.

* FIX: Reorient fieldmaps to RAS before estimating B-splines (#354)

2.4.2 (April 20, 2023)

Bug-fix release in the 2.4.x series.

Same fixes as 2.4.1, but this time for phase-difference and direct fieldmaps
we missed last time.

* FIX: Capture and report partial fieldmaps (#351)

2.4.1 (March 20, 2023)

New feature release in the 2.4.x series.

This release provides improved tolerance (and debugging output)
for incomplete fieldmap inputs.

* FIX: Log incomplete fieldmaps, rather than erroring (#341)
* ENH: Consistently log failures to form fieldmaps (#343)

2.4.0 (March 10, 2023)

New feature release in the 2.4.x series.

This release supports fMRIPrep 23.0.x and Nibabies 23.1.x.

* FIX: Reorient phase-encoding directions along with fieldmaps when preparing inputs to TOPUP (#339)
* FIX: Correct overly-sensitive obliqueness check (#335)

2.3.0 (March 01, 2023)

New feature release in the 2.3.x series.

This release supports fMRIPrep 23.0.x and Nibabies 23.0.x.

* ENH: Calculate fieldwarps in reference space in unwarp_wf (#334)
* TEST: Squeeze image before passing to SimpleBeforeAfter (#337)
* MAINT: Rotate CircleCI secrets and setup up org-level context (#329)
* CI: Run unit tests on Python 3.10 (#326)
* CI: Switch to miniconda setup, install fsl tools through conda (#322)