Sample code

Author: basarat

js/deep/deeper/bar.d.ts

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+export declare class Bar {
+}

js/deep/deeper/bar.js

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+var Bar = (function () {
+    function Bar() {
+    }
+    return Bar;
+})();
+exports.Bar = Bar;

js/deep/foo.d.ts

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+export declare var foo: number;

js/deep/foo.js

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+exports.foo = 123;

js/index.d.ts

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+export * from "./deep/foo";
+export * from "./deep/deeper/bar";
+export declare var bas: string;

js/index.js

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+function __export(m) {
+    for (var p in m) if (!exports.hasOwnProperty(p)) exports[p] = m[p];
+}
+__export(require("./deep/foo"));
+__export(require("./deep/deeper/bar"));
+exports.bas = "123";

package.json

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+{
+  "name": "ts-npm-module",
+  "version": "1.0.1",
+  "description": "A sample TypeScript npm module",
+  "main": "js/index.js",
+  "typescript":{
+    "definition":"ts-npm-module.d.ts"
+  },
+  "scripts": {
+    "test": "echo \"Error: no test specified\" && exit 1"
+  },
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/basarat/ts-npm-module.git"
+  },
+  "keywords": [
+    "typescript",
+    "atom"
+  ],
+  "author": "basaratali@gmail.com",
+  "license": "MIT",
+  "bugs": {
+    "url": "https://github.com/basarat/ts-npm-module/issues"
+  },
+  "homepage": "https://github.com/basarat/ts-npm-module#readme"
+}

ts-npm-module.d.ts

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+
+declare module "ts-npm-module/js/deep/deeper/bar"{
+    import tmp = require('js/deep/deeper/bar');
+    export = tmp;
+}
+
+declare module "ts-npm-module/js/deep/foo"{
+    import tmp = require('js/deep/foo');
+    export = tmp;
+}
+
+declare module "ts-npm-module/js/index"{
+    import tmp = require('js/index');
+    export = tmp;
+}
+
+declare module "ts-npm-module"{
+    import tmp = require('js/index');
+    export = tmp;
+}

ts/deep/deeper/bar.ts

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+export class Bar {
+}

ts/deep/foo.ts

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+export var foo = 123;

ts/index.ts

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+// Sample exports from other modules
+export * from "./deep/foo";
+export * from "./deep/deeper/bar";
+
+// Sample export of our own
+export var bas = "123";

ts/tsconfig.json

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+{
+    "version": "1.5.0-alpha",
+    "compilerOptions": {
+        "target": "es5",
+        "module": "commonjs",
+        "declaration": true,
+        "noImplicitAny": false,
+        "removeComments": true,
+        "noLib": false,
+        "preserveConstEnums": true,
+        "suppressImplicitAnyIndexErrors": true,
+        "outDir": "../js"
+    },
+    "filesGlob": [
+        "./**/*.ts",
+        "!./node_modules/**/*.ts"
+    ],
+    "files": [
+        "./deep/deeper/bar.ts",
+        "./deep/foo.ts",
+        "./index.ts"
+    ]
+}