Edit reference in DESCRIPTION file
Add url links to all documentation
Synchronize and test with Travis
Synchronize package with Git
Revise examples to limit data file size
Update documentation of data files
Compress data files
Add donttest{} statements to long examples
Update terminology of sclerochronological elements
Add documentation for new data files
Check building of model and debug
Add examples to all executable functions
Add data files to allow running of examples
Rebuild package with updated functions
Revise and test all Rd files
Revise NAMESPACE
Test functions
Test and debug "Oyster_phase_run" and "Oyster_combined_run"
Update Rd description files
Update Data files to work with new functions
Debug "Oyster_run_secX" functions to streamline total model
running and link functions and output
Decompose "Oyster_log" function for use in aggregate functions
Debug "Oyster_run_secX" functions to streamline total model
running and link functions and output
Decompose "Oyster_log" function for use in aggregate functions
Debug "Oyster_suby_phases" function
Finalize "Oyster_Mass_gain" function to wrap up growth model
Build plotting function into "Oyster_accumulation" step to
increase user feedback
Fine-tune and test BMP and TIFF import functions
Test and finalize parameterization of phase maps
("Oyster_phase_matrix_BMP" and "Oyster_phase_matrix_TIF")
Move "Oyster_Mass_gain" function to phase model
Add heatmap plotting to "Oyster_Z_matrices" function to provide
in-model user feedback
Test, finalize and automate "Oyster_growth_model" function
Update input file specifics to allow parsing of shell growth time (days)
Update names of parameters to refer to "(sub)increments" instead of "years"
Revise model mechanics to include seasonal variation in growth rates
(most notably function: "Oyster_Increment_cross_section")
Revise model to include growth stops
Revise model to allow variable density through shell
Debug "Oyster_run_secX" functions to streamline total model
running and link functions and output
Decompose "Oyster_log" function for use in aggregate functions
Updated personal website URL
Updated date in DESCRIPTION
Updated dataset Rd files
First submission to CRAN
Create README and NEWS files
Update DESCRIPTION file
Edited line breaks in documentation files
Deleded non-ASCII characters from all documentation files
Edites examples to refer to paper in review
Write cran-comments.md
Updated CITATION file to fit the correct format
Run checks
Create description files
Update data files and descriptions
Run tests with data files
Create first version of package from R code