diff --git a/.cache.tar.xz b/.cache.tar.xz index e101a46c79..1ce3feb508 100644 Binary files a/.cache.tar.xz and b/.cache.tar.xz differ diff --git a/public/components.json b/public/components.json index 38ba0865f7..d6b893e625 100644 --- a/public/components.json +++ b/public/components.json @@ -7830,6 +7830,10 @@ "name": "rnafusion", "version": "3.0.2" }, + { + "name": "rnafusion", + "version": "3.0.2" + }, { "name": "rnafusion", "version": "3.0.2" @@ -25752,6 +25756,14 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "pathogensurveillance", + "version": "dev" + }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "pathogensurveillance", "version": "dev" @@ -108112,6 +108124,10 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "genomeassembler", "version": "dev" diff --git a/public/pipelines.json b/public/pipelines.json index f50c92a82f..e2c7f26730 100644 --- a/public/pipelines.json +++ b/public/pipelines.json @@ -8368,12 +8368,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/demultiplex", "created_at": "2020-03-05T15:48:10Z", - "updated_at": "2024-10-07T14:39:02Z", + "updated_at": "2024-10-26T23:05:18Z", "pushed_at": "2024-10-26T04:24:41Z", "homepage": "https://nf-co.re/demultiplex", "size": 14027, - "stargazers_count": 43, - "watchers_count": 43, + "stargazers_count": 44, + "watchers_count": 44, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -8398,7 +8398,7 @@ "visibility": "public", "forks": 36, "open_issues": 19, - "watchers": 43, + "watchers": 44, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -12320,7 +12320,7 @@ "forks_count": 1, "archived": false, "disabled": false, - "open_issues_count": 0, + "open_issues_count": 1, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -12338,7 +12338,7 @@ ], "visibility": "public", "forks": 1, - "open_issues": 0, + "open_issues": 1, "watchers": 0, "default_branch": "TEMPLATE", "temp_clone_token": "", @@ -12372,7 +12372,7 @@ } }, "network_count": 1, - "subscribers_count": 238, + "subscribers_count": 233, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, "team_core_permission_push": true, @@ -12401,7 +12401,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": -1, "has_required_topics": false, - "open_pr_count": 0, + "open_pr_count": 1, "repository_url": "https://github.com/nf-core/fastqrepair", "contributors": [ { @@ -18097,7 +18097,7 @@ "updated_at": "2024-10-22T08:42:20Z", "pushed_at": "2024-10-26T13:23:31Z", "homepage": "https://nf-co.re/mag", - "size": 23139, + "size": 23153, "stargazers_count": 213, "watchers_count": 213, "language": "Nextflow", @@ -20068,7 +20068,7 @@ "forks_count": 15, "archived": false, "disabled": false, - "open_issues_count": 26, + "open_issues_count": 27, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -20088,7 +20088,7 @@ ], "visibility": "public", "forks": 15, - "open_issues": 26, + "open_issues": 27, "watchers": 8, "default_branch": "dev", "temp_clone_token": "", @@ -20186,7 +20186,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 3, + "open_pr_count": 4, "repository_url": "https://github.com/nf-core/mcmicro", "contributors": [ { @@ -22934,7 +22934,7 @@ "forks_count": 7, "archived": false, "disabled": false, - "open_issues_count": 14, + "open_issues_count": 15, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -22950,7 +22950,7 @@ ], "visibility": "public", "forks": 7, - "open_issues": 14, + "open_issues": 15, "watchers": 10, "default_branch": "master", "temp_clone_token": "", @@ -23031,7 +23031,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 2, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/molkart", "contributors": [ { @@ -27538,9 +27538,9 @@ "url": "https://api.github.com/repos/nf-core/proteinfold", "created_at": "2022-03-03T10:41:35Z", "updated_at": "2024-10-22T14:57:14Z", - "pushed_at": "2024-10-17T14:24:07Z", + "pushed_at": "2024-10-27T00:00:35Z", "homepage": "https://nf-co.re/proteinfold", - "size": 6376, + "size": 6683, "stargazers_count": 54, "watchers_count": 54, "language": "Nextflow", @@ -27553,7 +27553,7 @@ "forks_count": 36, "archived": false, "disabled": false, - "open_issues_count": 22, + "open_issues_count": 21, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -27566,7 +27566,7 @@ ], "visibility": "public", "forks": 36, - "open_issues": 22, + "open_issues": 21, "watchers": 54, "default_branch": "master", "temp_clone_token": "", @@ -27659,7 +27659,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 4, + "open_pr_count": 3, "repository_url": "https://github.com/nf-core/proteinfold", "contributors": [ { @@ -27821,8 +27821,8 @@ }, { "tag_name": "dev", - "published_at": "2024-10-17T14:24:06Z", - "tag_sha": "bc823a14209685cb4fc4065511398ef2d8bd625e", + "published_at": "2024-10-27T00:00:35Z", + "tag_sha": "180d4af9df02c3e152ebc7395dbcd8fe8b985c83", "has_schema": true, "doc_files": [ "docs/output.md", @@ -32011,12 +32011,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/rnaseq", "created_at": "2018-03-29T13:10:58Z", - "updated_at": "2024-10-26T09:33:00Z", + "updated_at": "2024-10-26T23:04:37Z", "pushed_at": "2024-10-24T11:32:08Z", "homepage": "https://nf-co.re/rnaseq", "size": 72419, - "stargazers_count": 891, - "watchers_count": 891, + "stargazers_count": 892, + "watchers_count": 892, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -32024,7 +32024,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 703, + "forks_count": 704, "archived": false, "disabled": false, "open_issues_count": 66, @@ -32036,9 +32036,9 @@ "rna-seq" ], "visibility": "public", - "forks": 703, + "forks": 704, "open_issues": 66, - "watchers": 891, + "watchers": 892, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -32072,7 +32072,7 @@ "status": "disabled" } }, - "network_count": 703, + "network_count": 704, "subscribers_count": 150, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, @@ -35316,12 +35316,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/sarek", "created_at": "2019-04-30T15:43:00Z", - "updated_at": "2024-10-25T13:16:25Z", + "updated_at": "2024-10-26T23:54:23Z", "pushed_at": "2024-10-25T11:46:22Z", "homepage": "https://nf-co.re/sarek", "size": 92016, - "stargazers_count": 403, - "watchers_count": 403, + "stargazers_count": 404, + "watchers_count": 404, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -35332,7 +35332,7 @@ "forks_count": 405, "archived": false, "disabled": false, - "open_issues_count": 282, + "open_issues_count": 281, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -35351,8 +35351,8 @@ ], "visibility": "public", "forks": 405, - "open_issues": 282, - "watchers": 403, + "open_issues": 281, + "watchers": 404, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": true, @@ -43097,9 +43097,9 @@ "url": "https://api.github.com/repos/nf-core/tbanalyzer", "created_at": "2024-05-06T15:00:51Z", "updated_at": "2024-10-26T13:46:58Z", - "pushed_at": "2024-10-26T13:52:32Z", + "pushed_at": "2024-10-26T14:25:23Z", "homepage": "https://nf-co.re/tbanalyzer", - "size": 361, + "size": 376, "stargazers_count": 6, "watchers_count": 6, "language": "Nextflow", @@ -43112,7 +43112,7 @@ "forks_count": 1, "archived": false, "disabled": false, - "open_issues_count": 1, + "open_issues_count": 3, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -43122,7 +43122,7 @@ ], "visibility": "public", "forks": 1, - "open_issues": 1, + "open_issues": 3, "watchers": 6, "default_branch": "dev", "temp_clone_token": "", @@ -43184,7 +43184,7 @@ "TEMPLATE_branch_protection_enforce_admins": -1, "TEMPLATE_restrict_push": true, "has_required_topics": true, - "open_pr_count": 0, + "open_pr_count": 2, "repository_url": "https://github.com/nf-core/tbanalyzer", "contributors": [ {