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This is just the sample design file required for the pipeline. I will be using the reference genome and raw fastq files from the chipseq test-datasets branch.
Please can you check the github links to the fastq files in the design file. I recently asked (on nf-core gitter) how I would get the fastq files into nextflow if they are links. @ewels suggested "If you put in URLs for them (raw.github.com) then nextflow will automatically download them for you". I think I have done what he meant! Couldnt find any documentation anywhere.