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Pull requests: nf-core/scrnaseq

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Pull requests list

Back-merge the 4.0.3 security patch into dev
#572 opened Jul 28, 2026 by mashehu Contributor Loading…
2
Fix igenomes_base issue when igenome_ignore is true
#571 opened Jul 28, 2026 by atrigila • Draft
1
Important! Template update for nf-core/tools v4.0.3
#569 opened Jul 24, 2026 by nf-core-bot Member Loading…
Support for both TCR and BCR
#555 opened Jun 3, 2026 by leandrotiburske Loading…
11 tasks
6
Fix barcode usage
#543 opened May 12, 2026 by nictru Contributor Loading…
1
feat(cellranger/count): support SRA three-file FASTQ inputs (_1/_2/_3) in renaming logic enhancement New feature or request
#532 opened Mar 13, 2026 by emrunali Loading…
1
3
Add velocyto from bam for cellranger
#530 opened Mar 12, 2026 by agalitsyna Loading…
10 tasks done
3
Added VDJ concatenation modules and added MuData object
#435 opened Feb 27, 2025 by saraterzo Loading…
6 of 11 tasks
4.1.0
29
Altos auto detection chemistry modules
#391 opened Nov 4, 2024 by wzheng0520 • Draft
11 tasks
4.1.0
3
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