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Pull requests list

added indexcov : finding large INDEL using the BAI index
#1613 opened Aug 5, 2024 by lindenb Loading…
8 of 10 tasks
24
[WIP] --tools is now case insensitive
#1188 opened Aug 18, 2023 by adamrtalbot Loading…
10 tasks
1
28
vardictjava variant calling workflow
#1582 opened Jul 3, 2024 by eolaniru Loading…
11 tasks
13
TMB
#616 opened Jul 4, 2022 by FriederikeHanssen Loading…
8
Add nf-test sharding CI
#1668 opened Oct 1, 2024 by edmundmiller Loading…
11 tasks
@edmundmiller
10
add_dysgu_sarek
#1590 opened Jul 11, 2024 by poddarharsh15 Loading…
11 tasks
14
Sarek bcftools normalization
#1682 opened Oct 9, 2024 by Patricie34 Loading…
3 of 11 tasks
23
Check if flowcell id matches for paired samples
#1664 opened Sep 26, 2024 by pmoris Loading…
4 of 11 tasks
7
Added Minimap2 alignment
#1486 opened Apr 25, 2024 by EgorGuga Loading…
8 of 10 tasks
9
Add module bcftools/norm to sarek (in progress)
#1483 opened Apr 25, 2024 by JC-Delmas Loading…
1 of 11 tasks
16
Enable multiple ploidy values for controlfreec
#980 opened Mar 28, 2023 by FriederikeHanssen • Draft
9 tasks
1
11
Identified a WES ASCAT Error and updated documentation
#1638 opened Aug 29, 2024 by alexanderchang1 Loading…
2 tasks done
4
Replace DRAGMAP with NARFMAP
#1358 opened Dec 18, 2023 by edmundmiller • Draft
@edmundmiller
6
implementation of goleft/indexcov
#1312 opened Nov 3, 2023 by lindenb Loading…
1 of 9 tasks
10
increase memory for fgbio
#1584 opened Jul 9, 2024 by bounlu Loading…
3 of 11 tasks
3
Update Sentieon Docs
#1579 opened Jul 1, 2024 by edmundmiller Loading…
@edmundmiller
4
Split variantannotation in its own pipeline and import it
#1561 opened Jun 11, 2024 by maxulysse Loading…
11 tasks
7
switch to using --write-index instead of samtools index
#1338 opened Nov 23, 2023 by FriederikeHanssen • Draft
4 tasks
3
FEAT: Auto CHANGELOG GHA
#1688 opened Oct 14, 2024 by maxulysse • Draft
2
Add deepsomatic tool
#1647 opened Sep 10, 2024 by vaxyzek • Draft
11 tasks
2
Fix: Update variant calling tool - data type table in docs
#1635 opened Aug 28, 2024 by famosab Loading…
2 of 11 tasks
1
5
Fix: Convert bcf_annotations.tbi from empty() to value channel to prevent stalling
#1624 opened Aug 16, 2024 by bounlu Loading…
3
[WIP] Benchmarking per pipeline / POC
#1448 opened Mar 22, 2024 by famosab • Draft
10 tasks
@famosab
2
Sambamba
#1368 opened Dec 29, 2023 by stavgrossfeld • Draft
10 tasks
2
Varlociraptor calls
#1154 opened Jul 12, 2023 by FriederikeHanssen • Draft
10 tasks
3
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