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Issues: nf-core/sarek
Community feedback needed: (pre)-validation at the Sarek level
#798
opened Oct 13, 2022 by
maxulysse
Open
33
Community feedback needed: Add tutorials/faqs describing diff...
#955
opened Feb 28, 2023 by
FriederikeHanssen
Open
3
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vep_loftee
doesn't add the expected columns to INFO/CSQ
bug
#1691
opened Oct 21, 2024 by
MahShaaban
No status is 0 - but contains tumor only sample error message
bug
Something isn't working
#1685
opened Oct 11, 2024 by
maxulysse
Issue: FASTQC Process Fails with Exit Code 140 in nf-core/sarek Pipeline Using Singularity
bug
Something isn't working
#1683
opened Oct 10, 2024 by
SirAymane
Mutations called by Mutect2 in paired mode are not annotated by VEP
bug
Something isn't working
#1679
opened Oct 8, 2024 by
Janzulene
Pipeline does not stop immediately, when non-unique samples are provided in the samplesheet
bug
Something isn't working
#1674
opened Oct 3, 2024 by
milcs40
Read data length does not match expected size - bytes read: 2756; expected: 16013759
bug
Something isn't working
#1672
opened Oct 2, 2024 by
maxulysse
Wrong sample names in multiqc general table
bug
Something isn't working
#1658
opened Sep 19, 2024 by
LouisLeNezet
A USER ERROR has occurred: Bad input: Sample $name is not in BAM header: [...]
bug
Something isn't working
#1655
opened Sep 18, 2024 by
VivianRobin
use custom snpeff database, such as Candian.aruis
bug
Something isn't working
#1654
opened Sep 16, 2024 by
ybdong919
error running BQSR: cannot remove tmp file
bug
Something isn't working
#1645
opened Sep 4, 2024 by
jdownie2389
Avoid misleading error messages concerning sample-sheets
bug
Something isn't working
#1629
opened Aug 26, 2024 by
asp8200
GATK4_HAPLOTYPECALLER not running in parallel
bug
Something isn't working
#1617
opened Aug 9, 2024 by
sitems
ERROR > SAREK_BAM_VARIANT_CALLING_GERMLINE (MANTA)
bug
Something isn't working
#1611
opened Aug 3, 2024 by
kchilkert
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Updated in the last three days: updated:>2024-10-24.