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Pull requests: nf-core/rnaseq

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Pull requests list

fix: wire up skip_gtf_transcript_filter to CUSTOM_GTFFILTER ext.args
#1783 opened Apr 11, 2026 by pinin4fjords Member Loading…
2 tasks done
1
refactor: delocalise GTF_FILTER to nf-core custom/gtffilter
#1782 opened Apr 10, 2026 by pinin4fjords Member Loading…
3 tasks done
1
Add Parabricks resource configuration guide for full-size genomes
#1775 opened Apr 8, 2026 by pinin4fjords Member Loading…
2 tasks
1
Add stringtie_merge for de novo assembly Ready for review
#1755 opened Apr 3, 2026 by Odulhin Loading…
@Odulhin
1
docs: Refactor usage docs into user-centric multi-page structure
#1742 opened Mar 4, 2026 by adamrtalbot Contributor • Draft
1
2
demo: Record types for workflow outputs
#1703 opened Feb 13, 2026 by pinin4fjords Member • Draft
3 tasks
3
chore: Update nf-schema to 2.6.1 for strict syntax compatibility
#1680 opened Jan 23, 2026 by pinin4fjords Member Loading…
1 of 2 tasks
2
feat: Implement Nextflow workflow outputs syntax (breaking change)
#1679 opened Jan 21, 2026 by pinin4fjords Member • Draft
3 tasks
3
Qc optimization
#1601 opened Aug 22, 2025 by edmundmiller Contributor Loading…
11 tasks
@edmundmiller
4
Correct typos in rnaseq DE analysis docs
#1569 opened Jun 10, 2025 by johnvusich Loading…
2 tasks done
1
ARM Megatests
#1529 opened Mar 26, 2025 by edmundmiller Contributor Loading…
@edmundmiller
12
Container configs
#1515 opened Mar 17, 2025 by edmundmiller Contributor Loading…
@edmundmiller
15
Try matthias' fix to download
#1439 opened Oct 23, 2024 by pinin4fjords Member • Draft
11 tasks
2
allow integer sample names
#1421 opened Oct 18, 2024 by idot Contributor Loading…
1 task
8
Update nextflow_schema.json
#1397 opened Oct 2, 2024 by rraadd88 Loading…
1 of 11 tasks
2
Copy optimized resources from Tower
#1209 opened Feb 6, 2024 by edmundmiller Contributor • Draft
@edmundmiller
4
ProTip! no:milestone will show everything without a milestone.