From b5931b94083ad583f1eb1c34a2d91fb67535207e Mon Sep 17 00:00:00 2001
From: Nico Trummer <nictru32@gmail.com>
Date: Fri, 12 Jul 2024 10:28:29 +0200
Subject: [PATCH] Attempt solving #155

---
 modules/local/ciriquant/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/local/ciriquant/main.nf b/modules/local/ciriquant/main.nf
index db228929..8cc2eec2 100644
--- a/modules/local/ciriquant/main.nf
+++ b/modules/local/ciriquant/main.nf
@@ -9,7 +9,7 @@ process CIRIQUANT {
 
     input:
     tuple val(meta), path(reads)
-    tuple val(meta2), path(gtf)
+    tuple val(meta2), path(gtf, stageAs: 'annotations.gtf')
     tuple val(meta3), path(fasta)
     tuple val(meta4), path(bwa)
     tuple val(meta5), path(hisat2)