diff --git a/ingest/config/defaults.yaml b/ingest/config/defaults.yaml index e461e68..0ec4846 100644 --- a/ingest/config/defaults.yaml +++ b/ingest/config/defaults.yaml @@ -16,10 +16,8 @@ oc43: hku1: ncbi_taxon_id: "290028" annotations: "config/hku1/annotations.tsv" - # Optional fields to add to the NCBI Datasets output ncbi_dataset_fields: [] - # Config parameters related to the curate pipeline, shared by all viruses curate: # URL pointed to public generalized geolocation rules diff --git a/phylogenetic/config/defaults.yaml b/phylogenetic/config/defaults.yaml index c2060ba..28515ff 100644 --- a/phylogenetic/config/defaults.yaml +++ b/phylogenetic/config/defaults.yaml @@ -39,7 +39,6 @@ annotate_phylogeny: inference: "joint" columns: "country" - nl63: reference: "config/nl63/reference.fasta" genemap: "config/nl63/genemap.gff" @@ -58,7 +57,6 @@ nl63: annotate_phylogeny: inference: "joint" columns: "country" - oc43: reference: "config/oc43/reference.fasta" genemap: "config/oc43/genemap.gff" @@ -77,7 +75,6 @@ oc43: annotate_phylogeny: inference: "joint" columns: "country" - hku1: reference: "config/hku1/reference.fasta" genemap: "config/hku1/genemap.gff"