Catch-all task list to fine-tune staged phylogenetic trees

[j23414]

Context

The nipah pathogen pipeline is automated and will be automatically deployed to a staged site for initial fine-tuning.

• https://next.nextstrain.org/staging/nipah/all
• https://next.nextstrain.org/staging/nipah/human
• https://next.nextstrain.org/staging/nipah/I
• https://next.nextstrain.org/staging/nipah/II

This issue is a temporary catch-all for remaining tasks before pushing the trees to the live site.

TODO's

Feel free to edit and add to this list directly:

• Add a reasonable description.md to phylogenetic workflow
• Update the auspice_config.json header to point at this repository
• Document or revisit the subsampling parameters for the phylogenetic tree
• Instead of builds/{build}, use results/{build} to align with our pathogen-repo-guide