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Issues list

seasonal flu "virus" records should be indexed by isolate id instead of strain name
#165 opened Oct 18, 2024 by huddlej updated Oct 18, 2024
Revisit ingestion of VIDRL flat files
#161 opened Sep 11, 2024 by joverlee521 updated Oct 9, 2024
1
@huddlej @j23414 @joverlee521
7
Generate list of new titers references on each new ingest enhancement New feature or request
#163 opened Sep 23, 2024 by huddlej updated Oct 2, 2024
@huddlej @j23414 @joverlee521
1
Decouple data curation and upload
#162 opened Sep 11, 2024 by joverlee521 updated Sep 11, 2024
Parse VIDRL human sera pool measurements enhancement New feature or request
#158 opened Aug 14, 2024 by huddlej updated Aug 29, 2024
1
@j23414 @joverlee521
2
Publish to pypi and then bioconda
#156 opened Jul 17, 2024 by corneliusroemer updated Jul 17, 2024
1
Revisit tdb/upload's index_fields
#144 opened Oct 25, 2023 by joverlee521 updated Oct 25, 2023
1
Support ingest of individual-level human serology data for seasonal flu viruses enhancement New feature or request
#142 opened Oct 11, 2023 by huddlej updated Oct 11, 2023
5 tasks
Geolocation assignments fail for duplicate location names bug Something isn't working
#135 opened Dec 16, 2022 by joverlee521 updated Dec 28, 2022
@joverlee521
2
fauna downloads fail with Python 3.10 bug Something isn't working
#121 opened Apr 19, 2022 by huddlej updated Apr 19, 2022
Switch out xlrd enhancement New feature or request
#113 opened Feb 15, 2022 by joverlee521 updated Feb 15, 2022
1
argument parser in upload.py
#83 opened Apr 2, 2018 by rneher updated Jun 29, 2020
3
fauna doesn't work with rethinkdb 2.4
#99 opened Feb 1, 2020 by rneher updated May 17, 2020
3
Allow uploads of non-HI assay types.
#50 opened Feb 10, 2017 by barneypotter24 updated May 17, 2020
3
Update download_all to work with segments
#65 opened Jun 22, 2017 by trvrb updated May 17, 2020
@huddlej
2
implement caching for geo lookups
#72 opened Sep 25, 2017 by jameshadfield updated May 16, 2020
1
Sort out why Texas/50 is being dropped
#48 opened Feb 10, 2017 by trvrb updated May 2, 2020
@barneypotter24
1
fauna uploads fail in python 3 unicode error
#81 opened Jan 16, 2018 by lmoncla updated Jan 16, 2018
1
Suggest using direct clinical sample sequence for MEX_CIENI551 Zika genome
#75 opened Sep 26, 2017 by alliblk updated Sep 26, 2017
Pull genbank files with Accession numbers
#33 opened Sep 2, 2016 by chacalle updated Feb 25, 2017
12
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