diff --git a/ingest/workflow/snakemake_rules/fetch_sequences.smk b/ingest/workflow/snakemake_rules/fetch_sequences.smk index 7332b541..22c2d2c6 100644 --- a/ingest/workflow/snakemake_rules/fetch_sequences.smk +++ b/ingest/workflow/snakemake_rules/fetch_sequences.smk @@ -12,6 +12,7 @@ Produces final output as sequences_ndjson = "data/sequences_{serotype}.ndjson" """ +workflow.global_resources.setdefault("concurrent_deploys", 2) def download_serotype(wildcards): serotype = { @@ -24,6 +25,8 @@ def download_serotype(wildcards): return serotype[wildcards.serotype] rule fetch_from_genbank: + resources: + concurrent_deploys=1, output: genbank_ndjson="data/genbank_{serotype}.ndjson", params: