diff --git a/ingest/bin/post_process_metadata.py b/ingest/bin/post_process_metadata.py index 75cb5dd5..06fef215 100755 --- a/ingest/bin/post_process_metadata.py +++ b/ingest/bin/post_process_metadata.py @@ -54,13 +54,13 @@ def _set_strain_name(record): def _set_url(record): """Set url column from accession""" - return "https://www.ncbi.nlm.nih.gov/nuccore/" + record["accession"] + return "https://www.ncbi.nlm.nih.gov/nuccore/" + str(record["accession"]) def _set_paper_url(record): """Set paper_url from publication""" if pd.notna(record["publications"]): - paper_url = "https://www.ncbi.nlm.nih.gov/pubmed/" + record["publications"] + paper_url = "https://www.ncbi.nlm.nih.gov/pubmed/" + str(record["publications"]) return paper_url.split(",")[0] return ""