From af25286821acf2ac655efbf0c5acaf1dbb38912b Mon Sep 17 00:00:00 2001
From: j23414 <jennifer.chang.bioinform@gmail.com>
Date: Tue, 28 Mar 2023 14:03:02 -0700
Subject: [PATCH] fix: Use curl for downloading files

Pick curl instead of detecting curl/wget as discussed in:
https://github.com/nextstrain/ebola/pull/6#discussion_r1048835183
---
 ingest/workflow/snakemake_rules/transform.smk | 13 +------------
 1 file changed, 1 insertion(+), 12 deletions(-)

diff --git a/ingest/workflow/snakemake_rules/transform.smk b/ingest/workflow/snakemake_rules/transform.smk
index c19eade6..3804978e 100644
--- a/ingest/workflow/snakemake_rules/transform.smk
+++ b/ingest/workflow/snakemake_rules/transform.smk
@@ -20,18 +20,7 @@ rule fetch_general_geolocation_rules:
         geolocation_rules_url=config["transform"]["geolocation_rules_url"],
     shell:
         """
-        # (1) Pick curl or wget based on availability    
-        if which curl > /dev/null; then
-            download_cmd="curl -fsSL --output"
-        elif which wget > /dev/null; then
-            download_cmd="wget -O"
-        else
-            echo "ERROR: Neither curl nor wget found. Please install one of them."
-            exit 1
-        fi
-
-        # (2) Fetch general geolocation rules
-        $download_cmd {output.general_geolocation_rules} {params.geolocation_rules_url}
+        curl -fsSL --output {output.general_geolocation_rules} {params.geolocation_rules_url}
         """