diff --git a/Snakefile b/Snakefile index 245107e6..0549509e 100644 --- a/Snakefile +++ b/Snakefile @@ -83,18 +83,6 @@ rule decompress: zstd -d -c {input.metadata} > {output.metadata} """ -# rule wrangle_metadata: -# input: -# metadata="data/metadata_{serotype}.tsv", -# output: -# metadata="results/wrangled_metadata_{serotype}.tsv", -# params: -# strain_id=config.get("strain_id_field", "strain"), #accession -# shell: -# """ -# csvtk -t rename -f strain -n strain_original {input.metadata} \ -# | csvtk -t mutate -f {params.strain_id} -n strain > {output.metadata} -# """ rule filter: """