From e6b91586422f883f480a6be9aedff0716f78ad24 Mon Sep 17 00:00:00 2001 From: james hadfield Date: Wed, 17 Jul 2024 11:21:02 +1200 Subject: [PATCH] Run h5n1-cattle-outbreak builds on AWS Batch The build has recently expanded in scope with the addition of segment-level builds resulting in runtime increase from ~10min to ~80min. Parallelisation should speed this up a lot. --- .github/workflows/phylogenetic-ncbi.yaml | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/.github/workflows/phylogenetic-ncbi.yaml b/.github/workflows/phylogenetic-ncbi.yaml index e5b0a26..2536ba1 100644 --- a/.github/workflows/phylogenetic-ncbi.yaml +++ b/.github/workflows/phylogenetic-ncbi.yaml @@ -78,7 +78,7 @@ jobs: uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master secrets: inherit with: - runtime: docker + runtime: aws-batch run: | declare -a config; @@ -89,6 +89,10 @@ jobs: fi; nextstrain build \ + --detach \ + --no-download \ + --cpus 16 \ + --memory 28800mib \ . \ deploy_all \ --configfile config/h5n1-cattle-outbreak.yaml \