From 8934d30f3b6d1fd427dbfbaaa4c8a5bf345a172a Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Wed, 21 Aug 2024 15:44:05 -0700 Subject: [PATCH] Update changelog entry for weighted sampling Link to the filtering and subsampling guide, which provides in-depth examples on when and how to use the new feature. --- CHANGES.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/CHANGES.md b/CHANGES.md index 1ece03de7..576b2661f 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -7,7 +7,7 @@ * A new command, `augur merge`, now allows for generalized merging of two or more metadata tables. [#1563][] (@tsibley) * Two new commands, `augur read-file` and `augur write-file`, now allow external programs to do i/o like Augur by piping from/to these new commands. They provide handling of compression formats and newlines consistent with the rest of Augur. [#1562][] (@tsibley) * A new debugging mode can be enabled by setting the `AUGUR_DEBUG` environment variable to `1` (or any non-empty value). Currently the only effect is to print more information about handled (i.e. anticipated) errors. For example, stack traces and parent exceptions in an exception chain are normally omitted for handled errors, but setting this env var includes them. Future debugging and troubleshooting features, like verbose operation logging, will likely also condition on this new debugging mode. [#1577][] (@tsibley) -* filter: Added the ability to use weights in subsampling. See help text of `--group-by-weights` for more information. [#1454][] (@victorlin) +* filter: Added the ability to use weights in subsampling. See help text of `--group-by-weights` and the updated [Filtering and Subsampling guide][] for more information. [#1454][] (@victorlin) ### Bug Fixes @@ -20,6 +20,7 @@ [#1563]: https://github.com/nextstrain/augur/pull/1563 [#1564]: https://github.com/nextstrain/augur/pull/1564 [#1577]: https://github.com/nextstrain/augur/pull/1577 +[Filtering and Subsampling guide]: https://docs.nextstrain.org/en/latest/guides/bioinformatics/filtering-and-subsampling.html