From 7f9e462e3b46ae8febdcf20ca7e27973a7accb90 Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Fri, 25 Aug 2023 11:29:55 -0700 Subject: [PATCH] Update changelog Lots of changes in this PR, but only a couple are user-facing. All other changes can be considered performance improvements that do not change functionality. --- CHANGES.md | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/CHANGES.md b/CHANGES.md index 91dad5480..e400630a2 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -2,18 +2,29 @@ ## __NEXT__ +### Features + +* filter: Add a new argument `--query-columns` allowing users to explicitly specify columns and data types for when automatic type inference behaves unexpectedly. [#1294][] (@victorlin) + +### Bug fixes + +* filter: The order of rows in `--output-metadata` and `--output-strains` now reflects the order in the original `--metadata`. [#1290][] (@victorlin) + +[#1294]: https://github.com/nextstrain/augur/pull/1294 ## 22.4.0 (29 August 2023) ### Features * refine: Export covariance matrix and standard deviation for clock rate regression in the node data JSON output when these values are calculated by TreeTime. These new values appear in the `clock` data structure of the JSON output as `cov` and `rate_std` keys, respectively. [#1284][] (@huddlej) +* filter: Add a new argument `--query-columns` allowing users to explicitly specify columns and data types for when automatic type inference behaves unexpectedly. [#1294][] (@victorlin) ### Bug fixes * clades: Fix outputs for genes named `NA` (previously the value was replaced by `nan`). [#1293][] (@rneher) * distance: Improve documentation by describing how gaps get treated as indels and how users can ignore specific characters in distance calculations. [#1285][] (@huddlej) * Fix help output compatibility with non-Unicode streams. [#1290][] (@victorlin) +* filter: The order of rows in `--output-metadata` and `--output-strains` now reflects the order in the original `--metadata`. [#1290][] (@victorlin) [#1284]: https://github.com/nextstrain/augur/pull/1284 [#1285]: https://github.com/nextstrain/augur/pull/1285