Version 25.07.0-edge

• Add -template option to plugin create command and improve class name normalization (#6334) [c2c879d]
• Add read permissions to nextflow launcher (#6288) [3614aea]
• Add support for Bitbucket API tokens instead of access tokens (#6337) [1d73b87]
• Add token support for BitBucket, Gitea and Gitlab repository providers (#6212) [9d8943e]
• Add version, kind, and spec to lineage schema (#6075) [6328613]
• Add warning for Azure Batch lowPriority pools (#6261) [a32fd50]
• Add Workflow onComplete and onError sections (#6275) [4fd97b9]
• Add custom date time format support with configurable NXF_DATE_FORMAT (#6013) [163cd37]
• BREAKING: Improve eval output hash with semantic names instead of raw commands (#6346) [d86be1a]
• Fix Fail if splitFastq receives incomplete record (#6268) [0869a34]
• Fix AWS transfer manager anonymous fallback (#6296) [ed5c99e]
• Fix Azure Batch startTask concatenation issue (#6300) (#6305) [81d5c0d]
• Fix AzureRepositoryProvider readBytes operation (#6286) [f6eb2f7]
• Fix CSV writer with empty list (#6333) [46ae10d]
• Fix ExecutorRetryConfig null pointer exception [ae66102]
• Fix Job arrays exceeding queue size limit (#5920) (#6345) [66abf24]
• Fix NPE in GoogleBatchMachineTypeSelector when spotPrice is null [a797a79]
• Fix Reset terminal color after lint success/failure message (#6323) [17b05ba]
• Fix bug in DefaultObserverFactory (#6259) [bec4bf7]
• Fix bug with workflow output index file (#6328) [fa97230]
• Fix bugs with workflow output and lineage (#6254) [21a6470]
• Fix explicit it closure parameter (#6276) [99f9edf]
• Fix formatting of channel factories (#6282) [f73f87b]
• Fix new plugins registry download when OCI repositories require tokens (#6303) [12fbef3]
• Fix silent failure when downloading a directory with AWS SDK v2 (#6266) [2d76d8f]
• Fix submitted count when aborting submitted tasks (#6281) [d0d3e10]
• Fix typos (#6291) [18c278b]
• Fix error_action typo (#6283) [cc5a9c9]
• Fix GitlabRepositoryProvider now handles leading slashes for content URLs (#6284) [b7fa6f4]
• Fix Invoke workflow complete handler on all workflow errors (#4299) [9d24615]
• Fix Improve Fusion license error message (#6313) [c3f397e]
• Migration guide for workflow outputs (#6162) [9a4f79d]
• Move AST transforms to nf-lang (#6247) [824dabb]
• Register fully-qualified process names at compile-time (#6312) [9a70cdb]
• Remove warning on missing config [14be407]
• Rephrase nf-core extension pack description (#6273) [1446e54]
• Unify nf-lang config scopes with runtime classes (#6271) [bfa67ca]
• Update AWS Java SDK v2 guide #6269 [4a61e28]
• Update Azure and AWS deps (#6343) [ff00e2d]
• Update Gitea provider to gitea.com as default server (#6285) [cbfa232]
• Update changelog [e2e prod] [b48c069]
• Update nf-codecommit to AWS SDK v2 with corrected test (#6293) [1557a91]
• Update standard types docs (#6329) [a76b760]
• Update to plugin registry V1 (#6316) [9b1d1b6]
• Update trace observers to V2 (#6257) [544b8c4]
• Bump groovy 4.0.28 (#6304) [a468f8e]
• Bump netty-codec-http2:4.1.124.Final [7e690b4]
• Bump nextflow registry as default (#6339) [eaf1048]
• Bump org.apache.commons:commons-lang3 from 3.12.0 to 3.18.0 (#6272) [b8ccddb]
• Bump nf-wave@1.14.1 [5ee40f0]
• Bump nf-tower@1.14.0 [fe399de]
• Bump nf-k8s@1.1.1 [821f699]
• Bump nf-google@1.22.2 [9a4e579]
• Bump nf-codecommit@0.3.0 [3ec9e58]
• Bump nf-azure@1.19.0 [8a7e050]
• Bump nf-amazon@3.1.0 [2fb0f13]

Version 25.06.0-edge

• Add Git response max length check (#6190) [098fe84]
• Add docker.registryOverride option (#6205) [e26abe4]
• Add namespaces to nf-lang (#6176) [c839799]
• Add support for Bitbucket API token (#6209) [f711f24]
• Fix AWS NIO tests [069653d]
• Fix JWT token refresh to Fusion validation request (#6231) [95dfdaf]
• Fix Apptainer and singularity --no-https option (#6216) [66ead2c]
• Fix class not found exception Google Life science executor (#6193) [7bfb935]
• Fix false error on nested closure in config process directive (#6203) [481c773]
• Fix false error when using stdin/stdout in a tuple (#6219) [5d7f12c]
• Fix false warning in config schema validator (#6240) [4e55cee]
• Fix http response err message [1f05451]
• Fix mamba env create stalls at prompt [e7c9379]
• Fix null reference error in lint command (#6202) [3e1837e]
• Fix readBytes for non-GitHub providers (#6243) [fa79c12]
• Fix replace List.getFirst with List.get(0) for compatibility [83428ee]
• Fix same Conda env is re-created for same module (#6166) [b46f01f]
• Fix stack overflow error with workflow metadata (#5988) [9d50c49]
• Fix Maven publish with aws credentials [34d64ab]
• Implement retry strategy for Git repository provider (#6195) [0f92282]
• Implement unordered directory hash (#6197) [a0eeed8]
• Minor Azure Batch disk slot calculation demoted to debug (#6234) [c65955c]
• Remove deprecated GsonHelper class [700fadd]
• Remove deprecated nexus-staging plugin [68b449b]
• Rename IncludeModuleNode to IncludeEntryNode (#6217) [1f456d9]
• Replace URLConnection with HttpClient (#6188) [d1e6836]
• Return null result when repository provider has not auth [9d7fd9f]
• Unwrap Failsafe exception cause in Wave client [0cb39df]
• Update Google dependencies (#6229) [8bd42ac]
• Update stalebot (#6228) [27174df]
• Update Wave retryPolicy default values (#6222) [b8069a5]
• Upgrade AWS instructions to AL2023 (#6183) [ed40709]
• Upgrade to AWS Java SDK v2 (#6165) [fc99b44]
• Upload Google Batch log on task exit (#6226) [78d9f47]
• Bump Google instance type for testing [bde9ef1]
• Bump Logback version 1.5.18 [e3d5ced]
• Bump Slf4j version 2.0.17 [93199e0]
• Bump gson version 2.13.1 [ab8e36a]
• Bump nf-wave@1.14.0 [71ecf26]
• Bump nf-tower@1.13.0 [53d1bfb]
• Bump nf-google@1.22.1 [cdf56d1]
• Bump nf-azure@1.18.0 [fc51406]
• Bump nf-amazon@3.0.0 [ffe699b]

Version 25.04.6

• Upload Google Batch log on task exit (#6226) [ci fast] [3f2f85a]
• Bump nf-google@1.21.1 [d145d9f]

Version 25.04.5

• Fix JWT token refresh to Fusion validation request (#6231) [267ee1c]
• Fix null reference error in lint command (#6202) [5347bb7]
• Fix false error on nested closure in config process directive (#6203) [d6f4e66]
• Fix false error when using stdin/stdout in a tuple (#6219) [159ec37]
• Document bucketDir config option (#6191) [e5ed05b]
• Document secrets config variable (#6230) [79f1ad6]
• Bump nf-tower@1.11.4 [3cbc2aa]

Version 24.10.9

• Fix JWT token refresh to Fusion validation request (#6231) [716468d]
• Disable latest upload [35b0c5c]
• Bump nf-tower@1.9.3-patch2 [4ed4083]

Version 24.04.6

• Fix JWT token refresh to Fusion validation request (#6231) [3ee05c0]
• Disable latest upload [5fd87b2]
• Bump nf-tower@1.9.1.patch2 [38908a1]

Version 25.04.4

• Fix bug in generated Groovy code (#6082) [ead2f32]
• Fix default imports in included configs (#6096) [831a577]
• Fix variable checking in v2 config parser (#6097) [686ff60]
• Sort linter errors/warnings by source location (#6098) [f51f339]

Version 24.10.8

• Add Fusion license validation [02b4dd7]
• Bump nf-wave@1.7.5-patch1 [cf6af9c]
• Bump nf-tower@1.9.3-patch1 [bdef217]

Version 24.04.5

• Add Fusion license validation [cb7210b]
• Bump nf-wave@1.4.2-patch2 [69b6334]
• Bump nf-tower@1.9.1-patch1 [8bfdc67]

Version 25.04.3

• Add Platform info to Fusion license (#6142) [375db65]
• Force overwritting to trace file (#6105) [59e9d88]
• Bump nf-tower@1.11.3 [f7509bc]