DESCRIPTION

Package: KGExplorer
Type: Package
Title: Biomedical Knowledge Network Construction and Analysis
Version: 0.99.03
Authors@R:
    c(
    person(given = "Brian",
           family = "Schilder",
           role = c("aut","cre"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191"))
     ) 
Description: Query, construct, and analyse large-scale biomedical knowledge graphs and ontologies.
URL: https://github.com/neurogenomics/KGExplorer
BugReports: https://github.com/neurogenomics/KGExplorer/issues
Encoding: UTF-8
Depends: R (>= 4.2)
biocViews:
  Software,
  Network,
  GraphAndNetwork
Imports:
  simona,
  rols,
  data.table,
  ggplot2,
  plotly,
  pals,
  visNetwork,
  ggnetwork,
  Matrix,
  stringr,
  rvest,
  igraph,
  tidygraph,
  tidyquant,
  utils,
  methods,
  BiocParallel,
  GenomicRanges,
  orthogene,
  echogithub,
  downloadR,
  EnsDb.Hsapiens.v75
Suggests:
  rworkflows,
  markdown,
  rmarkdown,
  remotes,
  knitr,
  testthat (>= 3.0.0), 
  heatmaply,
  ComplexHeatmap,
  ggdist,
  htmltools,
  piggyback,
  monarchr,
  rphenoscape,
  biocBiocypher,
  VariantAnnotation,
  AnnotationFilter,
  AnnotationHub,
  TxDb.Hsapiens.UCSC.hg19.knownGene,
  TxDb.Hsapiens.UCSC.hg38.knownGene,
  MASS,
  GenomeInfoDb, 
  ensembldb,
  BiocGenerics,
  readxl,
  htmlwidgets,
  sparklyr,
  httr,
  jsonlite,
  scales,
  tidyr,
  DiagrammeR,
  forcats,
  arrow
Remotes:
  github::charlieccarey/monarchr,
  github::phenoscape/rphenoscape,
  github::vjcitn/biocBiocypher,
  github::RajLabMSSM/echogithub,
  github::RajLabMSSM/downloadR,
  github::kwstat/pals
RoxygenNote: 7.3.1
VignetteBuilder: knitr
License: GPL-3
Config/testthat/edition: 3