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Changelog

  • 1.1.5
    • Resolve out-standing bugs with chunking code for large uploads (@alexbaden)
    • Fixes to TIF import/exports to use tifffile instead of PIL
    • Many other backwards-compatible fixed things...
  • 1.1.0
    • Add converters for voxel lists and ndarrays
    • Add the ndio.remote.NDIngest remote
    • Improve how ndio version checking works
    • Improve how ndio installation and updates check for module versions (setup.py)
    • Add checks for styleguide, both pep8 and docstrings
  • 1.0.0
    • This changelog prepares ndio to be stable.
    • We now follow Semantic Versioning.
  • 0.1.18
    • Standardize converter names in the convert module
    • Fix post cutout's zyx bug
    • Use blosc whenever possible for post_upload
  • 0.1.17
    • Standardize RAMON converter function names in __init__
    • Fix RAMON uploads to incorporate kvpairs
  • 0.1.16
    • Fix synapse_type keyerror bug.
    • Un-nest RAMON metadata
    • get_ramon_metadata returns single value if you pass a single ID as int
    • Speed up the Travis CI build dramatically (4×)
  • 0.1.15
    • kv pairs bug finally (definitely) resolved.
    • Make ocp user-settable (neurodata(suffix="ocp"))
    • RAMON now uses the JSON interface for all but volume downloads.
  • 0.1.14
    • Switch check_tokens to default to False, to prevent stalling the main thread all the time.
    • Add neurodata#get_block_size as a convenience function.
    • Rename 3d-export functions to make more sense
    • neurodata#reserve_ids
  • 0.1.13
    • add_ and get_subvolumes, to read and write to LIMS. (These are good example volumes to download when you're looking at a new dataset.)
  • 0.1.12
    • Bug fixes to XYZ→ZYX formatting bugs
    • Add tests for downloads and posts, with and without chunking
    • Remove autoingest tests for now. @AEusman, that's on you for now
  • 0.1.11 (Feb 23 16)
    • Token-check decorator in neurodata remote
    • Fix download chunking bug
    • Remove coveralls from travis because it's not working...
    • Remove some dependencies from the install script
    • Integrate LIMS shim
    • Improve uploads of cutouts by chunking intelligently
    • Check for token-exist before trying operations (to improve error messages)
    • Fix test-suite to allow autoingest synchronicity
    • Add propagate_token and check_propagate_status to neurodata remote
  • 0.1.10
    • Actually fix kvpair bug... (thanks Will!)
    • Use blosc interface because it is pretty clearly superior
    • Kill OCPMeta
    • Kill OCP remote
  • 0.1.9
    • Further-robustify the test-suite, and add some goodies for caching in Travis. (PRs now must pass in GitHub before being mergeable)
    • Fix absurd RAMON download bug with kvpairs
  • 0.1.8
    • Merging RAMONs on the Remote now supports deleting 'stale' objects with the delete flag
    • Uploading and downloading RAMONs now occurs in batches of size >=100, meaning that large-batch downloads no longer fail.
  • 0.1.7
    • Fix post_cutout axis ordering
  • 0.1.6
    • Updates to ramon/hdf5 conversion
    • Export vert/faces to 3D formats (after running mcubes)
      • obj
      • ply
      • dae
    • Better handling of temp-files when generating hdf5
    • Refactor for new neurodata/ndio location on GitHub
  • 0.1.5
    • Bug fixes to autoingest and tests for the same
  • 0.1.4
    • Bug fixes to requesting volume cutouts
  • 0.1.3
    • chunk volumes correctly and then crop when you ask for something that hasn't been cube-aligned
  • 0.1.2
    • RAMON metadata lookups use hdf5 instead of json
  • 0.1.1
    • Resolves RAMON download bug
    • Adds ramon_type filter to remote.neurodata.get_ramon_ids
  • 0.1.0
    • Deprecated OCP in favor of ndio.remote.neurodata
  • 0.0.24
    • Fix more RAMON inheritance bugs and resolve syntax error in OCP
  • 0.0.23
    • Fix RAMONNeuron inheritance bug
    • OCP#get_image_offset
    • OCP#get_image_size
  • 0.0.22
    • Update (mostly) to Python 3 compatibility
    • Add auto-ingest scripts
    • Fix PNG-export bug
    • some more bug-fixes and updates to documentation
  • 0.0.21
    • Better nested-dictionary support in ndlims
    • Rename some modules to improve importing experience
    • Add PIL-style open() for arbitrary image files
    • Fix test-suite to run in TravisCI
    • Convert printouts to exceptions
  • 0.0.20
    • Coveralls/TravisCI testing and coverage configuration
    • Organized badges, which shouldn't deserve a slot in the changelog except that I added Travis and Coveralls badges
    • Add m2g skeleton and basic testing
    • Remove safety-check for overwriting files (careful!)
    • Add support for 3D mesh export
    • OCP.get_channels for a token
    • OCP.get_token_dataset and OCP.get_token_info
    • OCP.get_public_datasets
    • OCP.get_public_datasets_and_tokens, a function that returns a dictionary relating keys (datasets) to a list of tokens that use it.
  • 0.0.19
    • Fix get_ramon_ids
    • Add support for DAE Collada export (Blender-friendly). Affects the requirements.txt file!
    • pep8 compliant!
  • 0.0.18 (November 24 2015)
    • Added more unit tests
    • Fix get_cutout, add get_volume
  • 0.0.17 (November 15 2015)
    • Add a bunch more support for RAMON downloads
    • Add remaining RAMON datatypes
    • Documentation! docs.neurodata.io/ndio
    • Tutorials! docs.neurodata.io/nddocs/ndio
    • Fix tests, add support for CircleCI (see badge on GitHub)
  • 0.0.16 (October 31 2015)
    • RAMON Downloads
    • HDF5-to-RAMON conversion
    • Add support for RAMONNeuron
  • 0.0.15
    • Bug fixes
    • Prepare for RAMON import from HDF5 (0.0.16)
  • 0.0.14 (October 29 2015)
    • Remove excess code for RAMON downloads
    • Fix some old docstrings so everything's pretty again
    • Add channel addition and removal
    • Add IMAGE and ANNOTATION enumerables
  • 0.0.13 (October 26 2015)
    • RAMON Downloads fully working for Segments
    • OCPMeta Remote support for sets with secret
  • 0.0.12 (October 19 2015)
    • OCP Metadata Access
    • Add API key support to coincide with new API keys on LIMS server
    • Fix png export behavior
  • 0.0.11 (October 18 2015)
    • A few more bug fixes in time for SfN
  • 0.0.10 (October 17 2015)
    • Bug fixes for volume uploads
  • 0.0.9 (October 17 2015)
    • OCPMeta for get/set by token
    • Fixes for URL construction
  • 0.0.8 (October 13 2015)
    • RAMONSegment downloads
    • Begin test suite
  • 0.0.7 (October 11 2015)
    • Download RAMON metadata (thanks Alex!)
    • OCPMeta Remote
  • 0.0.6 (October 9 2015)
    • post_cutout to upload cutout data to writeable projects
    • A bunch of better error handling
    • Prepping for more Remotes eventually
  • 0.0.5 (October 7 2015)
    • ndio.version attribute, plus better version management
    • Allows writing image files directly from binary string
    • Optimized download code for numpy-array access