tyr

Author: neuralsignal

Dockerfile

@@ -27,105 +27,15 @@
 # COPY ./docker-entrypoint.sh /
 # ENTRYPOINT ["/docker-entrypoint.sh"]
 # EXPOSE 3306
-
-FROM debian:buster-slim
-
-# add our user and group first to make sure their IDs get assigned consistently, regardless of whatever dependencies get added
-RUN groupadd -r mysql && useradd -r -g mysql mysql
-
-RUN apt-get update && apt-get install -y --no-install-recommends gnupg dirmngr && rm -rf /var/lib/apt/lists/*
-
-# add gosu for easy step-down from root
-# https://github.com/tianon/gosu/releases
-ENV GOSU_VERSION 1.12
-RUN set -eux; \
-	savedAptMark="$(apt-mark showmanual)"; \
-	apt-get update; \
-	apt-get install -y --no-install-recommends ca-certificates wget; \
-	rm -rf /var/lib/apt/lists/*; \
-	dpkgArch="$(dpkg --print-architecture | awk -F- '{ print $NF }')"; \
-	wget -O /usr/local/bin/gosu "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-$dpkgArch"; \
-	wget -O /usr/local/bin/gosu.asc "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-$dpkgArch.asc"; \
-	export GNUPGHOME="$(mktemp -d)"; \
-	gpg --batch --keyserver hkps://keys.openpgp.org --recv-keys B42F6819007F00F88E364FD4036A9C25BF357DD4; \
-	gpg --batch --verify /usr/local/bin/gosu.asc /usr/local/bin/gosu; \
-	gpgconf --kill all; \
-	rm -rf "$GNUPGHOME" /usr/local/bin/gosu.asc; \
-	apt-mark auto '.*' > /dev/null; \
-	[ -z "$savedAptMark" ] || apt-mark manual $savedAptMark > /dev/null; \
-	apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false; \
-	chmod +x /usr/local/bin/gosu; \
-	gosu --version; \
-	gosu nobody true
-
-RUN mkdir /docker-entrypoint-initdb.d
-
-RUN apt-get update && apt-get install -y --no-install-recommends \
-# for MYSQL_RANDOM_ROOT_PASSWORD
-		pwgen \
-# for mysql_ssl_rsa_setup
-		openssl \
-# FATAL ERROR: please install the following Perl modules before executing /usr/local/mysql/scripts/mysql_install_db:
-# File::Basename
-# File::Copy
-# Sys::Hostname
-# Data::Dumper
-		perl \
-# install "xz-utils" for .sql.xz docker-entrypoint-initdb.d files
-		xz-utils \
-	&& rm -rf /var/lib/apt/lists/*
-
-RUN set -ex; \
-# gpg: key 5072E1F5: public key "MySQL Release Engineering <mysql-build@oss.oracle.com>" imported
-	key='A4A9406876FCBD3C456770C88C718D3B5072E1F5'; \
-	export GNUPGHOME="$(mktemp -d)"; \
-	gpg --batch --keyserver ha.pool.sks-keyservers.net --recv-keys "$key"; \
-	gpg --batch --export "$key" > /etc/apt/trusted.gpg.d/mysql.gpg; \
-	gpgconf --kill all; \
-	rm -rf "$GNUPGHOME"; \
-	apt-key list > /dev/null
-
-ENV MYSQL_MAJOR 5.7
-ENV MYSQL_VERSION 5.7.30-1debian10
-
-RUN echo "deb http://repo.mysql.com/apt/debian/ buster mysql-${MYSQL_MAJOR}" > /etc/apt/sources.list.d/mysql.list
-
-# the "/var/lib/mysql" stuff here is because the mysql-server postinst doesn't have an explicit way to disable the mysql_install_db codepath besides having a database already "configured" (ie, stuff in /var/lib/mysql/mysql)
-# also, we set debconf keys to make APT a little quieter
-RUN { \
-		echo mysql-community-server mysql-community-server/data-dir select ''; \
-		echo mysql-community-server mysql-community-server/root-pass password ''; \
-		echo mysql-community-server mysql-community-server/re-root-pass password ''; \
-		echo mysql-community-server mysql-community-server/remove-test-db select false; \
-	} | debconf-set-selections \
-	&& apt-get update && apt-get install -y mysql-server="${MYSQL_VERSION}" && rm -rf /var/lib/apt/lists/* \
-	&& rm -rf /var/lib/mysql && mkdir -p /var/lib/mysql /var/run/mysqld \
-	&& chown -R mysql:mysql /var/lib/mysql /var/run/mysqld \
-# ensure that /var/run/mysqld (used for socket and lock files) is writable regardless of the UID our mysqld instance ends up having at runtime
-	&& chmod 777 /var/run/mysqld \
-# comment out a few problematic configuration values
-	&& find /etc/mysql/ -name '*.cnf' -print0 \
-		| xargs -0 grep -lZE '^(bind-address|log)' \
-		| xargs -rt -0 sed -Ei 's/^(bind-address|log)/#&/' \
-# don't reverse lookup hostnames, they are usually another container
-	&& echo '[mysqld]\nskip-host-cache\nskip-name-resolve' > /etc/mysql/conf.d/docker.cnf
-
-VOLUME /var/lib/mysql
-
-COPY docker-entrypoint.sh /usr/local/bin/
-RUN ln -s usr/local/bin/docker-entrypoint.sh /entrypoint.sh # backwards compat
-ENTRYPOINT ["docker-entrypoint.sh"]
-
-EXPOSE 3306 33060
-CMD ["mysqld"]
-
 FROM continuumio/anaconda3
 # install the notebook package
 RUN pip install --no-cache --upgrade pip && \
     pip install --no-cache notebook && \
     pip install seaborn && \
+    conda install -c conda-forge docker-compose && \
     python -m pip install git+https://github.com/gucky92/datajoint-python.git
 
+EXPOSE 3306
 # create user with a home directory
 ARG NB_USER
 ARG NB_UID