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1. lasvShiny lasvShiny Public

   This Rshiny app allows users to explore protein multiplex data from Lassa fever patients in Nigeria. Main findings published in The Lancet Infectious Dieases: https://www.thelancet.com/journals/lan…

   R 1 1

2. transcriptomics-bulk transcriptomics-bulk Public

   Jackie's bulk RNA-seq workflow

   Shell

3. virus-amplicon virus-amplicon Public

   Processing data from virus genome amplicon sequencing

   Shell 1 1

4. virus-shotgun virus-shotgun Public

   Characterize virus stocks

   Shell 2

5. snv-clustering snv-clustering Public

   Clustering samples via pairwise comparison of SNV sets

   R

6. athletic-cluster athletic-cluster Public

   Bioinformatic methods for iScience paper "Understanding SARS-CoV-2 transmission: Linking traditional contact tracing with genomic surveillance of a SARS-CoV-2 student cluster on a large urban campus"

   Python