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Hmm, it looks like a relative omit pattern like 'src/whatever/*.py' won't work with relative_files=true. You can make it work for now with a pattern of '*/src/whatever/*.py' while I figure out the implications of a change...
When doing pypa/virtualenv#2477 I noticed that with relative_files report.omit seems no longer active. See failing run https://github.com/pypa/virtualenv/actions/runs/3824948711/jobs/6507540653, while before turning relative files on here https://github.com/pypa/virtualenv/actions/runs/3821105582/jobs/6499921063 seems to still work.
The config file is here: https://github.com/gaborbernat/virtualenv/blob/fix/pyproject.toml#L96-L112
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