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environment.yml
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name: viral-tcr
channels:
- salilab
- defaults
- conda-forge
dependencies:
- anyio=3.5.0=py39hca03da5_0
- appnope=0.1.2=py39hca03da5_1001
- argon2-cffi=21.3.0=pyhd3eb1b0_0
- argon2-cffi-bindings=21.2.0=py39h1a28f6b_0
- asttokens=2.0.5=pyhd3eb1b0_0
- attrs=21.4.0=pyhd3eb1b0_0
- babel=2.9.1=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- beautifulsoup4=4.11.1=py39hca03da5_0
- biopython=1.78=py39h1a28f6b_0
- blas=1.0=openblas
- bleach=4.1.0=pyhd3eb1b0_0
- bottleneck=1.3.5=py39heec5a64_0
- brotli=1.0.9=h1a28f6b_7
- brotli-bin=1.0.9=h1a28f6b_7
- brotlipy=0.7.0=py39h1a28f6b_1002
- ca-certificates=2022.07.19=hca03da5_0
- certifi=2022.9.24=py39hca03da5_0
- cffi=1.15.1=py39h22df2f2_0
- cryptography=37.0.1=py39h834c97f_0
- cycler=0.11.0=pyhd3eb1b0_0
- cython=0.29.32=py39hc377ac9_0
- debugpy=1.5.1=py39hc377ac9_0
- decorator=5.1.1=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- docopt=0.6.2=py39hca03da5_1
- entrypoints=0.4=py39hca03da5_0
- executing=0.8.3=pyhd3eb1b0_0
- fftw=3.3.9=h1a28f6b_1
- fonttools=4.25.0=pyhd3eb1b0_0
- freetype=2.11.0=h1192e45_0
- giflib=5.2.1=h1a28f6b_0
- importlib-metadata=4.11.3=py39hca03da5_0
- ipykernel=6.15.2=py39hca03da5_0
- ipython=8.4.0=py39hca03da5_0
- ipython_genutils=0.2.0=pyhd3eb1b0_1
- jedi=0.18.1=py39hca03da5_1
- jinja2=3.0.3=pyhd3eb1b0_0
- jpeg=9e=h1a28f6b_0
- json5=0.9.6=pyhd3eb1b0_0
- jsonschema=4.16.0=py39hca03da5_0
- jupyter_client=7.3.5=py39hca03da5_0
- jupyter_core=4.11.1=py39hca03da5_0
- jupyter_server=1.18.1=py39hca03da5_0
- jupyterlab=3.4.4=py39hca03da5_0
- jupyterlab_pygments=0.1.2=py_0
- jupyterlab_server=2.15.2=py39hca03da5_0
- kiwisolver=1.4.2=py39hc377ac9_0
- lcms2=2.12=hba8e193_0
- lerc=3.0=hc377ac9_0
- libbrotlicommon=1.0.9=h1a28f6b_7
- libbrotlidec=1.0.9=h1a28f6b_7
- libbrotlienc=1.0.9=h1a28f6b_7
- libcxx=14.0.6=h848a8c0_0
- libdeflate=1.8=h1a28f6b_5
- libffi=3.4.2=hc377ac9_4
- libgfortran=5.0.0=11_2_0_he6877d6_26
- libgfortran5=11.2.0=he6877d6_26
- libopenblas=0.3.21=h269037a_0
- libpng=1.6.37=hb8d0fd4_0
- libsodium=1.0.18=h1a28f6b_0
- libtiff=4.4.0=had003b8_0
- libwebp=1.2.2=h68602c7_0
- libwebp-base=1.2.2=h1a28f6b_0
- llvm-openmp=14.0.6=hc6e5704_0
- lz4-c=1.9.3=hc377ac9_0
- markupsafe=2.1.1=py39h1a28f6b_0
- matplotlib=3.5.2=py39hca03da5_0
- matplotlib-base=3.5.2=py39hc377ac9_0
- matplotlib-inline=0.1.6=py39hca03da5_0
- mistune=0.8.4=py39h1a28f6b_1000
- munkres=1.1.4=py_0
- nbclassic=0.3.5=pyhd3eb1b0_0
- nbclient=0.5.13=py39hca03da5_0
- nbconvert=6.4.4=py39hca03da5_0
- nbformat=5.5.0=py39hca03da5_0
- ncurses=6.3=h1a28f6b_3
- nest-asyncio=1.5.5=py39hca03da5_0
- notebook=6.4.12=py39hca03da5_0
- numexpr=2.8.3=py39h144ceef_0
- numpy-base=1.23.1=py39hadd41eb_0
- openssl=1.1.1q=h1a28f6b_0
- packaging=21.3=pyhd3eb1b0_0
- pandas=1.4.4=py39hc377ac9_0
- pandocfilters=1.5.0=pyhd3eb1b0_0
- parso=0.8.3=pyhd3eb1b0_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pillow=9.2.0=py39h4d1bdd5_1
- pip=22.2.2=py39hca03da5_0
- prometheus_client=0.14.1=py39hca03da5_0
- prompt-toolkit=3.0.20=pyhd3eb1b0_0
- psutil=5.9.0=py39h1a28f6b_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.2=pyhd3eb1b0_0
- pycparser=2.21=pyhd3eb1b0_0
- pygments=2.11.2=pyhd3eb1b0_0
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pyparsing=3.0.9=py39hca03da5_0
- pyrsistent=0.18.0=py39h1a28f6b_0
- pysocks=1.7.1=py39hca03da5_0
- python=3.9.13=hbdb9e5c_1
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-fastjsonschema=2.16.2=py39hca03da5_0
- pytz=2022.1=py39hca03da5_0
- pyzmq=23.2.0=py39hc377ac9_0
- readline=8.1.2=h1a28f6b_1
- requests=2.28.1=py39hca03da5_0
- scipy=1.9.1=py39h9d039d2_0
- seaborn=0.11.2=pyhd3eb1b0_0
- send2trash=1.8.0=pyhd3eb1b0_1
- setuptools=63.4.1=py39hca03da5_0
- six=1.16.0=pyhd3eb1b0_1
- sniffio=1.2.0=py39hca03da5_1
- soupsieve=2.3.1=pyhd3eb1b0_0
- sqlite=3.39.3=h1058600_0
- stack_data=0.2.0=pyhd3eb1b0_0
- terminado=0.13.1=py39hca03da5_0
- testpath=0.6.0=py39hca03da5_0
- tk=8.6.12=hb8d0fd4_0
- tornado=6.2=py39h1a28f6b_0
- tqdm=4.64.1=py39hca03da5_0
- traitlets=5.1.1=pyhd3eb1b0_0
- typing-extensions=4.3.0=py39hca03da5_0
- typing_extensions=4.3.0=py39hca03da5_0
- tzdata=2022c=h04d1e81_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- webencodings=0.5.1=py39hca03da5_1
- websocket-client=0.58.0=py39hca03da5_4
- wheel=0.37.1=pyhd3eb1b0_0
- xz=5.2.6=h1a28f6b_0
- zeromq=4.3.4=hc377ac9_0
- zipp=3.8.0=py39hca03da5_0
- zlib=1.2.12=h5a0b063_3
- zstd=1.5.2=h8574219_0
- pip:
- ampal==1.4.0
- blosum==1.2.0
- charset-normalizer==2.1.1
- coloredlogs==15.0.1
- fair-esm==1.0.2
- flatbuffers==22.9.24
- humanfriendly==10.0
- idna==3.4
- mpmath==1.2.1
- networkx==2.8.7
- numpy==1.23.3
- onnxruntime==1.12.1
- pipreqs==0.4.11
- protobuf==4.21.7
- sympy==1.11.1
- torch==1.12.1
- urllib3==1.26.12
- yarg==0.1.9