DESCRIPTION

Package: escape
Title: Easy single cell analysis platform for enrichment
Version: 2.2.2
Authors@R: c(
    person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "ncborch@gmail.com"),
    person(given = "Jared", family = "Andrews", role = c("aut"), email = "jared.andrews07@gmail.com"),
    person(given = "Alexei", family = "Martsinkovskiy", role = c("ctb"), email = "alexei.martsinkovskiy@gmail.com")
    )
Description: A bridging R package to facilitate gene set enrichment analysis (GSEA) in the context of single-cell RNA sequencing. Using raw count information, Seurat objects, or SingleCellExperiment format, users can perform and visualize ssGSEA, GSVA, AUCell, and UCell-based enrichment calculations across individual cells. 
License: MIT + file LICENSE 
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.2
biocViews: Software, SingleCell, Classification, Annotation, GeneSetEnrichment, Sequencing, GeneSignaling, Pathways
Depends: R (>= 4.1)
Imports: 
    AUCell,
    BiocParallel,
    grDevices,
    dplyr,
    ggdist,
    ggplot2,
    ggpointdensity,
    GSEABase,
    GSVA,
    SingleCellExperiment,
    ggridges,
    msigdbr,
    stats,
    reshape2,
    patchwork,
    MatrixGenerics,
    utils,
    SummarizedExperiment,
    UCell,
    stringr,
    methods,
    SeuratObject,
    Matrix
Suggests: 
    Seurat,
    hexbin,
    scran,
    knitr,
    rmarkdown,
    markdown,
    BiocStyle,
    RColorBrewer,
    rlang,
    spelling,
    testthat (>= 3.0.0),
    vdiffr
VignetteBuilder: knitr
Language: en-US