diff --git a/version.inc b/version.inc index f1e489d3..88e2ff0c 100644 --- a/version.inc +++ b/version.inc @@ -1 +1,32 @@ -#define VERSION "1.1.9" +#define VERSION "1.1.10" + + +// 1.1.10 07/18/2020 makeDistTree -min_arc_prob; DistTree::reroot() does not use 3*SD +// 1.1.9 06/23/2020 DistTree::mergeDissimAttrs() bug affecting indiscernibles +// 1.1.8 06/21/2020 variance_min > 0 => indiscernibles are used, otherwise max_degree is very large +// 1.1.7 06/20/2020 compbine_dissims.cpp: swap(name1,name2) +// 1.1.6 06/17/2020 inc/GenBank/ -> inc/genome/, inc/marker/ -> inc/rRNA/ +// 1.1.5 06/16/2020 inc/ contains: server, database, bulk, bulk_remote +// 1.1.4 06/11/2020 distTree_inc_save.sh: inc/*.sh are usable for users +// 1.1.3 06/10/2020 distTree_inc_complete.sh: #3 (update database) parameter is removed +// 1.1.2 06/09/2020 distTree_inc_new.sh: ADD = max($OBJS * $RATE, 1) +// 1.1.1 06/05/2020 [ 1 == 1 ] -> true; [ 1 == 0 ] -> false +// 1.1.0 06/03/2020 inc/request_closest.sh: output is 1 column +// 1.0.2 06/02/2020 cpp/genetics/, cpp/dissim/ +// 0.0.0 05/11/2020 align.cpp: DNA: gap_open = -1 (was: 0) +// 0.0.0 05/03/2020 Genome.surveillance = 1: -> dead +// 0.0.0 03/04/2020 uniColl..Genogroup2outliers: "update Genome set genogroup = null" before setting Genome.genogroup +// 0.0.0 02/28/2020 bacteria genomes: BUSCO.10, variance power = 4.0, root at 2780458:5196388 (Thermotogae, not Terabacteria group, cf. 16S tree) +// 0.0.0 02/13/2020 extractFastaProt -replace: print all replacements +// 0.0.0 02/12/2020 hmmsearch2besthits.cpp: print all HMMs (which may hit the same proteins) +// 0.0.0 01/10/2020 update Taxroot set hashes_max = 150000 where id = 4751 and hashes_max = 30000; +// 0.0.0 11/06/2019 dbo.TaxLineage and phen/ files are added ' [TYPE_SPECIES]' +// 0.0.0 10/01/2019 distTree_inc.sh: -reinsert is removed +// 0.0.0 09/30/2019 GenBank/: hashed directores: genome, phen; inc/phen_large +// 0.0.0 09/26/2019 panfs/marker/.../inc/request_closest.sh: BLAST output is ordered by nident instead of e-value +// 0.0.0 09/01/2019 distTree_inc_new.sh: makeDistTree -reinsert +// 0.0.0 09/01/2019 better optimization for weights \sim 0 +// 0.0.0 09/01/2019 Genogroup2outliers: p-value is lowered (two-tail test): Genome.genogroup_outlier is set to null +// 0.0.0 09/01/2019 normalized object criterion; normalized arc error density +// 0.0.0 09/01/2019 hybrid2db.sh, db2unhybrid.sh: obsolete; Genome.outlier = 'auto_hybrid': redo +