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rnaseq_collapse fail. 134/139

Status: Open.

#196 In ncbi/egapx;

· Alen473 opened on Dec 27, 2025

downloaded unrelated files?

Status: Open.

#195 In ncbi/egapx;

· jianghao0799 opened on Dec 26, 2025

EGAPx breaking at gnomon_report step

Status: Open.

#188 In ncbi/egapx;

· gpreising opened on Nov 25, 2025

'egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_chainer' run with long time.

Status: Open.

#174 In ncbi/egapx;

· meiyang12 opened on Sep 12, 2025

Use of RNA-seq strand information in EGAPX pipeline

Status: Open.

#172 In ncbi/egapx;

· BitaoQiu opened on Sep 8, 2025

BUG: Treats local read files as SRR, if it supplied as path to read list.

reads errorerror related to long or short readserror related to long or short reads

Status: Open.

#165 In ncbi/egapx;

· Alteroldis opened on Aug 25, 2025

Offline mode, can not identify the local fasta file

reads errorerror related to long or short readserror related to long or short reads

Status: Open.

#159 In ncbi/egapx;

· HeChao0915 opened on Aug 3, 2025

Process <code>egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (2)</code> terminated with an error exit status (3)

reads errorerror related to long or short readserror related to long or short reads

Status: Open.

#155 In ncbi/egapx;

· jacquelinemattos opened on Jul 30, 2025

STAR aligner show suboptimal CPU usage

Status: Open.

#134 In ncbi/egapx;

· Alteroldis opened on Jun 20, 2025