This workflow provides the necessary Slurm profile, cluster configuration files and test dataset to demonstrate how Snakemake can be run on a Ronin/AWS Slurm-based auto-scaling cluster.
git clone https://github.com/nathanhaigh/ronin_snakemake_test
cd ronin_snakemake_testsnakemake --profile profiles/slurm- Nathan S. Watson-Haigh (@nathanhaigh)
The test workflow is copied from: https://github.com/snakemake-workflows/ngs-test-data