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using pipeline-structural-variation for non-human data

Status: Open.

#25 In nanoporetech/pipeline-structural-variation;

· splaisan opened on Jul 13, 2021

Solving environment fails

Status: Open.

#24 In nanoporetech/pipeline-structural-variation;

· prakashraaz opened on Jul 7, 2021

Issue with eval target

Status: Open.

#23 In nanoporetech/pipeline-structural-variation;

· ArjenB85 opened on May 17, 2021

Is cuteSV able to read .csi index file?

Status: Open.

#22 In nanoporetech/pipeline-structural-variation;

· giuliafrascarelli opened on Apr 14, 2021

cuteSV nanopore parameters.

Status: Open.

#21 In nanoporetech/pipeline-structural-variation;

· humbleflowers opened on Mar 30, 2021

Module dependency error

Status: Open.

#20 In nanoporetech/pipeline-structural-variation;

· jimmy200340 opened on Mar 26, 2021

MissingRuleException error

Status: Open.

#19 In nanoporetech/pipeline-structural-variation;

· hannahgoldswain opened on Mar 24, 2021

No module named 'boto3'

Status: Open.

#17 In nanoporetech/pipeline-structural-variation;

· Payam-Ebadi opened on Mar 20, 2021

VCF output not reporting translocations/inversions/duplications

Status: Open.

#16 In nanoporetech/pipeline-structural-variation;

· damioresegun opened on Jan 25, 2021

Start pipeline from VCF file

Status: Open.

#15 In nanoporetech/pipeline-structural-variation;

· ndierckx opened on Nov 1, 2020

Deprecated option in Snakefile <code>call_sniffles</code>

Status: Open.

#14 In nanoporetech/pipeline-structural-variation;

· sotakan opened on Aug 16, 2020

_sniffles_filtered.vcf.gz no vcf headers

Status: Open.

#13 In nanoporetech/pipeline-structural-variation;

· ggrimes opened on Jun 19, 2020