Fix time difference recognition for time-descending data sets. Fix zfpy being a widget dependency despite never being used (fix Numpy 2 issues). Set ipywidgets to 7.7.1 to fix Google Colab. Bump to 0.4.17.

Author: msoechting

lexcube/_frontend.py

@@ -22,4 +22,4 @@
 """
 
 module_name = "lexcube"
-module_version = "^0.4.16"
+module_version = "^0.4.17"

lexcube/_version.py

@@ -17,4 +17,4 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
-__version__ = "0.4.16"
+__version__ = "0.4.17"

lexcube/lexcube_server/.gitignore

@@ -106,7 +106,7 @@ celerybeat.pid
 
 # Environments
 .env
-.venv
+.venv*
 env/
 venv/
 ENV/

lexcube/lexcube_server/requirements-core.txt

@@ -1,10 +1,10 @@
 s3fs==2023.12.2
-bottleneck==1.3.7
+bottleneck==1.4.0
 cachey==0.2.1
 dask==2024.1.1
 netCDF4==1.6.5
-opencv-python-headless==4.8.1.78
+numpy<2.0.0
+opencv-python-headless==4.10.0.84
 psutil==5.9.6
 xarray==2023.10.1
-zarr==2.16.1
-zfpy==1.0.0
+zarr==2.16.1

lexcube/lexcube_server/src/tile_server.py

@@ -40,7 +40,6 @@
 import numpy as np
 import psutil
 import xarray as xr
-import zfpy
 from dask.cache import Cache
 from typing import Union
 
@@ -999,9 +998,11 @@ def __init__(self) -> None:
         self.precision = -1
 
     def encode(self, data):
+        import zfpy
         return zfpy.compress_numpy(data, self.tolerance, self.rate, self.precision)
 
     def decode(self, data):
+        import zfpy
         return zfpy.decompress_numpy(data)
 
 class TileServer:

package.json

@@ -1,6 +1,6 @@
 {
   "name": "lexcube",
-  "version": "0.4.16",
+  "version": "0.4.17",
   "description": "Lexcube: 3D Data Cube Visualization in Jupyter Notebooks",
   "keywords": [
     "jupyter",

pyproject.toml

@@ -35,17 +35,16 @@ classifiers = [
 ]
 dependencies = [
     "aiohttp>=3.7.4",
-    "ipywidgets>=7.0.0",
+    "ipywidgets==7.7.1",
     "bottleneck>=1.3.7",
     "cachey>=0.2.1",
     "dask>=2022.12.0",
     "netCDF4>=1.6.3",
     "opencv-python-headless>=4.7.0.72",
     "xarray>=v2022.12.0",
     "zarr>=2.14.2",
-    "zfpy>=1.0.0",
 ]
-version = "0.4.16"
+version = "0.4.17"
 
 [project.optional-dependencies]
 docs = [
@@ -109,7 +108,7 @@ build_cmd = "build:prod"
 github_url = "https://github.com/msoechting/lexcube/"
 
 [tool.tbump.version]
-current = "0.4.16"
+current = "0.4.17"
 
 # Example of a semver regexp.
 # Make sure this matches current_version before

src/lexcube-client/src/client/constants.ts

@@ -78,6 +78,6 @@ const DEFAULT_WIDGET_HEIGHT = 768;
 const API_VERSION = 5;
 const TILE_VERSION = 2;
 
-const PACKAGE_VERSION = "0.4.16";
+const PACKAGE_VERSION = "0.4.17";
 
 export { DeviceOrientation, PACKAGE_VERSION, positiveModulo, range, getIndexDimensionOfFace, getAddressedFacesOfDimension, getFacesOfIndexDimension, capitalizeString, DEFAULT_WIDGET_WIDTH, DEFAULT_WIDGET_HEIGHT, DEFAULT_COLORMAP, ANOMALY_PARAMETER_ID_SUFFIX, TILE_FORMAT_MAGIC_BYTES, TILE_VERSION, TILE_SIZE, MAX_ZOOM_FACTOR, NAN_TILE_MAGIC_NUMBER, LOSSLESS_TILE_MAGIC_NUMBER, NAN_REPLACEMENT_VALUE, COLORMAP_STEPS, NOT_LOADED_REPLACEMENT_VALUE, API_VERSION, Dimension, CubeFace }

src/lexcube-client/src/client/interaction.ts

@@ -160,8 +160,8 @@ class CubeDimension {
         // }
         const indexLabel = this.indices[roundedIndex];
         if (this.type == CubeDimensionType.Time) {
-            const totalTimeSpanDays = ((this.indices[this.indices.length - 1] as Date).getTime() - (this.indices[0] as Date).getTime()) / (1000 * 60 * 60 * 24);
-            const secondsPerStep = ((this.indices[1] as Date).getTime() - (this.indices[0] as Date).getTime()) / (1000);
+            const totalTimeSpanDays = Math.abs(((this.indices[this.indices.length - 1] as Date).getTime() - (this.indices[0] as Date).getTime()) / (1000 * 60 * 60 * 24));
+            const secondsPerStep = Math.abs(((this.indices[1] as Date).getTime() - (this.indices[0] as Date).getTime()) / 1000);
             const daysPerStep = secondsPerStep / (60 * 60 * 24);
             const millisecondsRelevant = secondsPerStep < 1;
             return `${totalTimeSpanDays > 1 ? getDayString(indexLabel as Date) : ""} ${daysPerStep < 1 ? getTimeString(indexLabel as Date, millisecondsRelevant) : ""}`.trim();

tbump.toml

@@ -2,7 +2,7 @@
 # github_url = "https://github.com/<user or organization>/<project>/"
 
 [version]
-current = "0.4.16"
+current = "0.4.17"
 
 # Example of a semver regexp.
 # Make sure this matches current_version before